(21 nodes) Exon-exon junction complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107572958	Partner of Y14 and mago-like. (197 aa)
	upf3b	Regulator of nonsense transcripts 3B. (459 aa)
	ENSSGRP00000099627	annotation not available (1168 aa)
	LOC107549138	Protein mago nashi homolog. (147 aa)
	ENSSGRP00000099256	Protein CASC3-like. (752 aa)
	LOC107592456	RNA-binding protein 8A-like. (174 aa)
	LOC107585049	Protein CASC3. (758 aa)
	upf1	Regulator of nonsense transcripts 1 isoform X1. (1116 aa)
	ENSSGRP00000082288	Regulator of nonsense transcripts 3A-like. (413 aa)
	LOC107585897	Protein mago nashi homolog. (147 aa)
	ENSSGRP00000011166	Regulator of nonsense transcripts 3B-like. (119 aa)
	ENSSGRP00000010817	Coiled-coil domain containing 9. (337 aa)
	ENSSGRP00000010815	Coiled-coil domain-containing protein 9-like. (481 aa)
	ENSSGRP00000007448	Regulator of nonsense transcripts 3A-like. (123 aa)
	ENSSGRP00000007313	Regulator of nonsense transcripts 1-like. (946 aa)
	LOC107592145	RNA-binding protein 8A. (174 aa)
	UPF2	UPF2 regulator of nonsense mediated mRNA decay. (1192 aa)
	ENSSGRP00000076060	Coiled-coil domain containing 9. (667 aa)
	upf3a	Regulator of nonsense transcripts 3A isoform X1. (481 aa)
	ENSSGRP00000054536	Regulator of nonsense transcripts 3B-like. (374 aa)
	ENSSGRP00000033138	Partner of Y14 and mago B-like. (180 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000007313	ENSSGRP00000007448	ENSSGRP00000007313	ENSSGRP00000007448	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3A-like.	0.948
ENSSGRP00000007313	ENSSGRP00000011166	ENSSGRP00000007313	ENSSGRP00000011166	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3B-like.	0.990
ENSSGRP00000007313	ENSSGRP00000033138	ENSSGRP00000007313	ENSSGRP00000033138	Regulator of nonsense transcripts 1-like.	Partner of Y14 and mago B-like.	0.452
ENSSGRP00000007313	ENSSGRP00000054536	ENSSGRP00000007313	ENSSGRP00000054536	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3B-like.	0.990
ENSSGRP00000007313	ENSSGRP00000082288	ENSSGRP00000007313	ENSSGRP00000082288	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3A-like.	0.989
ENSSGRP00000007313	ENSSGRP00000099256	ENSSGRP00000007313	ENSSGRP00000099256	Regulator of nonsense transcripts 1-like.	Protein CASC3-like.	0.982
ENSSGRP00000007313	ENSSGRP00000099627	ENSSGRP00000007313	ENSSGRP00000099627	Regulator of nonsense transcripts 1-like.	annotation not available	0.995
ENSSGRP00000007313	LOC107549138	ENSSGRP00000007313	ENSSGRP00000032112	Regulator of nonsense transcripts 1-like.	Protein mago nashi homolog.	0.869
ENSSGRP00000007313	LOC107572958	ENSSGRP00000007313	ENSSGRP00000041485	Regulator of nonsense transcripts 1-like.	Partner of Y14 and mago-like.	0.452
ENSSGRP00000007313	LOC107585049	ENSSGRP00000007313	ENSSGRP00000094792	Regulator of nonsense transcripts 1-like.	Protein CASC3.	0.982
ENSSGRP00000007313	LOC107585897	ENSSGRP00000007313	ENSSGRP00000027939	Regulator of nonsense transcripts 1-like.	Protein mago nashi homolog.	0.869
ENSSGRP00000007313	LOC107592145	ENSSGRP00000007313	ENSSGRP00000002649	Regulator of nonsense transcripts 1-like.	RNA-binding protein 8A.	0.980
ENSSGRP00000007313	LOC107592456	ENSSGRP00000007313	ENSSGRP00000096565	Regulator of nonsense transcripts 1-like.	RNA-binding protein 8A-like.	0.980
ENSSGRP00000007313	UPF2	ENSSGRP00000007313	ENSSGRP00000080838	Regulator of nonsense transcripts 1-like.	UPF2 regulator of nonsense mediated mRNA decay.	0.995
ENSSGRP00000007313	upf1	ENSSGRP00000007313	ENSSGRP00000083200	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 1 isoform X1.	0.900
ENSSGRP00000007313	upf3a	ENSSGRP00000007313	ENSSGRP00000066431	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3A isoform X1.	0.989
ENSSGRP00000007313	upf3b	ENSSGRP00000007313	ENSSGRP00000110091	Regulator of nonsense transcripts 1-like.	Regulator of nonsense transcripts 3B.	0.990
ENSSGRP00000007448	ENSSGRP00000007313	ENSSGRP00000007448	ENSSGRP00000007313	Regulator of nonsense transcripts 3A-like.	Regulator of nonsense transcripts 1-like.	0.948
ENSSGRP00000007448	ENSSGRP00000033138	ENSSGRP00000007448	ENSSGRP00000033138	Regulator of nonsense transcripts 3A-like.	Partner of Y14 and mago B-like.	0.450
ENSSGRP00000007448	ENSSGRP00000099256	ENSSGRP00000007448	ENSSGRP00000099256	Regulator of nonsense transcripts 3A-like.	Protein CASC3-like.	0.918