(16 nodes) Seh1-associated complex network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107596811	Nitrogen permease regulator 3-like protein isoform X1. (609 aa)
	ENSSGRP00000007709	annotation not available (60 aa)
	ENSSGRP00000011510	WD repeat-containing protein 24-like. (714 aa)
	ENSSGRP00000036947	NPR3-like, GATOR1 complex subunit. (585 aa)
	ENSSGRP00000036992	DNA-3-methyladenine glycosylase-like. (210 aa)
	wdr24	WD repeat-containing protein 24 isoform X1. (779 aa)
	ENSSGRP00000044149	DEP domain containing 5, GATOR1 subcomplex subunit. (1480 aa)
	ENSSGRP00000045137	DEP domain containing 5, GATOR1 subcomplex subunit. (1393 aa)
	ENSSGRP00000054374	Methyltransferase like 25. (572 aa)
	ENSSGRP00000064175	WD repeat-containing protein 59-like. (766 aa)
	wdr59	WD repeat-containing protein 59 isoform X1. (960 aa)
	LOC107596818	DNA-3-methyladenine glycosylase-like. (284 aa)
	ENSSGRP00000088695	annotation not available (304 aa)
	ENSSGRP00000096176	annotation not available (64 aa)
	nprl2	Nitrogen permease regulator 2-like protein isoform X1. (379 aa)
	ENSSGRP00000000024	Methyltransferase-like protein 25. (78 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000000024	ENSSGRP00000007709	ENSSGRP00000000024	ENSSGRP00000007709	Methyltransferase-like protein 25.	annotation not available	0.433
ENSSGRP00000000024	ENSSGRP00000011510	ENSSGRP00000000024	ENSSGRP00000011510	Methyltransferase-like protein 25.	WD repeat-containing protein 24-like.	0.671
ENSSGRP00000000024	ENSSGRP00000036947	ENSSGRP00000000024	ENSSGRP00000036947	Methyltransferase-like protein 25.	NPR3-like, GATOR1 complex subunit.	0.433
ENSSGRP00000000024	ENSSGRP00000044149	ENSSGRP00000000024	ENSSGRP00000044149	Methyltransferase-like protein 25.	DEP domain containing 5, GATOR1 subcomplex subunit.	0.478
ENSSGRP00000000024	ENSSGRP00000045137	ENSSGRP00000000024	ENSSGRP00000045137	Methyltransferase-like protein 25.	DEP domain containing 5, GATOR1 subcomplex subunit.	0.478
ENSSGRP00000000024	ENSSGRP00000064175	ENSSGRP00000000024	ENSSGRP00000064175	Methyltransferase-like protein 25.	WD repeat-containing protein 59-like.	0.655
ENSSGRP00000000024	ENSSGRP00000096176	ENSSGRP00000000024	ENSSGRP00000096176	Methyltransferase-like protein 25.	annotation not available	0.433
ENSSGRP00000000024	LOC107596811	ENSSGRP00000000024	ENSSGRP00000087907	Methyltransferase-like protein 25.	Nitrogen permease regulator 3-like protein isoform X1.	0.433
ENSSGRP00000000024	nprl2	ENSSGRP00000000024	ENSSGRP00000101600	Methyltransferase-like protein 25.	Nitrogen permease regulator 2-like protein isoform X1.	0.510
ENSSGRP00000000024	wdr24	ENSSGRP00000000024	ENSSGRP00000043177	Methyltransferase-like protein 25.	WD repeat-containing protein 24 isoform X1.	0.671
ENSSGRP00000000024	wdr59	ENSSGRP00000000024	ENSSGRP00000067509	Methyltransferase-like protein 25.	WD repeat-containing protein 59 isoform X1.	0.655
ENSSGRP00000007709	ENSSGRP00000000024	ENSSGRP00000007709	ENSSGRP00000000024	annotation not available	Methyltransferase-like protein 25.	0.433
ENSSGRP00000007709	ENSSGRP00000011510	ENSSGRP00000007709	ENSSGRP00000011510	annotation not available	WD repeat-containing protein 24-like.	0.972
ENSSGRP00000007709	ENSSGRP00000036992	ENSSGRP00000007709	ENSSGRP00000036992	annotation not available	DNA-3-methyladenine glycosylase-like.	0.442
ENSSGRP00000007709	ENSSGRP00000044149	ENSSGRP00000007709	ENSSGRP00000044149	annotation not available	DEP domain containing 5, GATOR1 subcomplex subunit.	0.975
ENSSGRP00000007709	ENSSGRP00000045137	ENSSGRP00000007709	ENSSGRP00000045137	annotation not available	DEP domain containing 5, GATOR1 subcomplex subunit.	0.975
ENSSGRP00000007709	ENSSGRP00000054374	ENSSGRP00000007709	ENSSGRP00000054374	annotation not available	Methyltransferase like 25.	0.433
ENSSGRP00000007709	ENSSGRP00000064175	ENSSGRP00000007709	ENSSGRP00000064175	annotation not available	WD repeat-containing protein 59-like.	0.972
ENSSGRP00000007709	ENSSGRP00000088695	ENSSGRP00000007709	ENSSGRP00000088695	annotation not available	annotation not available	0.566
ENSSGRP00000007709	LOC107596818	ENSSGRP00000007709	ENSSGRP00000087970	annotation not available	DNA-3-methyladenine glycosylase-like.	0.442