(33 nodes) Cytoplasmic vesicle lumen network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000021112	Placenta associated 8, tandem duplicate 1. (106 aa)
	ENSSGRP00000102113	UPF0669 protein C6orf120 homolog. (186 aa)
	LOC107559555	GTP-binding protein 2-like isoform X1. (600 aa)
	ENSSGRP00000093000	annotation not available (149 aa)
	Nhlrc3	NHL repeat-containing protein 3. (157 aa)
	LOC107550278	Torsin-4A-like. (373 aa)
	ENSSGRP00000068467	Proenkephalin-A-like. (252 aa)
	LOC107583806	AMP deaminase 3-like isoform X1. (781 aa)
	ENSSGRP00000064222	Neuroserpin-like. (387 aa)
	ENSSGRP00000059947	UDP glucuronosyltransferase 5 family, polypeptide E1. (500 aa)
	Vps13a	Vacuolar protein sorting-associated protein 13A/C. (2966 aa)
	ENSSGRP00000056504	GTP-binding protein 2-like. (90 aa)
	LOC107553012	AMP deaminase 3-like isoform X1. (778 aa)
	ENSSGRP00000049478	annotation not available (542 aa)
	LOC107567459	Torsin-4A-like. (377 aa)
	Gtpbp2	GTP-binding protein 2. (547 aa)
	LOC107564650	Adenosine deaminase-like isoform X1. (376 aa)
	LOC107561424	N-acetylgalactosamine-6-sulfatase-like. (387 aa)
	LOC107586332	Serine/threonine-protein kinase 11-interacting protein-like isoform X1. (1175 aa)
	LOC107569657	AMP deaminase 3-like isoform X1. (787 aa)
	LOC107574722	Adenosine deaminase. (366 aa)
	ENSSGRP00000023838	AMP deaminase 3-like. (200 aa)
	ENSSGRP00000020986	Placenta associated 8, tandem duplicate 1. (106 aa)
	Dbh	Dopamine beta-monooxygenase. (583 aa)
	ENSSGRP00000013201	Serine/threonine kinase 11 interacting protein. (1060 aa)
	ENSSGRP00000011374	Galactosamine (N-acetyl)-6-sulfatase. (474 aa)
	LOC107573484	Torsin-4A. (390 aa)
	ENSSGRP00000010118	Dopamine beta-hydroxylase-like. (560 aa)
	ENSSGRP00000007915	Proenkephalin-A-like. (252 aa)
	ENSSGRP00000006391	annotation not available (153 aa)
	C6orf120	UPF0669 protein C6orf120 homolog. (186 aa)
	ENSSGRP00000004059	UDP glucuronosyltransferase 5 family, polypeptide E1. (454 aa)
	ENSSGRP00000002887	annotation not available (60 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Dbh	ENSSGRP00000010118	ENSSGRP00000020210	ENSSGRP00000010118	Dopamine beta-monooxygenase.	Dopamine beta-hydroxylase-like.	0.901
ENSSGRP00000002887	ENSSGRP00000049478	ENSSGRP00000002887	ENSSGRP00000049478	annotation not available	annotation not available	0.423
ENSSGRP00000002887	ENSSGRP00000056504	ENSSGRP00000002887	ENSSGRP00000056504	annotation not available	GTP-binding protein 2-like.	0.479
ENSSGRP00000002887	Gtpbp2	ENSSGRP00000002887	ENSSGRP00000035508	annotation not available	GTP-binding protein 2.	0.404
ENSSGRP00000007915	ENSSGRP00000068467	ENSSGRP00000007915	ENSSGRP00000068467	Proenkephalin-A-like.	Proenkephalin-A-like.	0.914
ENSSGRP00000010118	Dbh	ENSSGRP00000010118	ENSSGRP00000020210	Dopamine beta-hydroxylase-like.	Dopamine beta-monooxygenase.	0.901
ENSSGRP00000023838	LOC107564650	ENSSGRP00000023838	ENSSGRP00000035202	AMP deaminase 3-like.	Adenosine deaminase-like isoform X1.	0.414
ENSSGRP00000023838	LOC107574722	ENSSGRP00000023838	ENSSGRP00000024746	AMP deaminase 3-like.	Adenosine deaminase.	0.414
ENSSGRP00000049478	ENSSGRP00000002887	ENSSGRP00000049478	ENSSGRP00000002887	annotation not available	annotation not available	0.423
ENSSGRP00000056504	ENSSGRP00000002887	ENSSGRP00000056504	ENSSGRP00000002887	GTP-binding protein 2-like.	annotation not available	0.479
ENSSGRP00000068467	ENSSGRP00000007915	ENSSGRP00000068467	ENSSGRP00000007915	Proenkephalin-A-like.	Proenkephalin-A-like.	0.914
Gtpbp2	ENSSGRP00000002887	ENSSGRP00000035508	ENSSGRP00000002887	GTP-binding protein 2.	annotation not available	0.404
LOC107553012	LOC107564650	ENSSGRP00000054706	ENSSGRP00000035202	AMP deaminase 3-like isoform X1.	Adenosine deaminase-like isoform X1.	0.414
LOC107553012	LOC107574722	ENSSGRP00000054706	ENSSGRP00000024746	AMP deaminase 3-like isoform X1.	Adenosine deaminase.	0.414
LOC107564650	ENSSGRP00000023838	ENSSGRP00000035202	ENSSGRP00000023838	Adenosine deaminase-like isoform X1.	AMP deaminase 3-like.	0.414
LOC107564650	LOC107553012	ENSSGRP00000035202	ENSSGRP00000054706	Adenosine deaminase-like isoform X1.	AMP deaminase 3-like isoform X1.	0.414
LOC107564650	LOC107569657	ENSSGRP00000035202	ENSSGRP00000027602	Adenosine deaminase-like isoform X1.	AMP deaminase 3-like isoform X1.	0.414
LOC107564650	LOC107574722	ENSSGRP00000035202	ENSSGRP00000024746	Adenosine deaminase-like isoform X1.	Adenosine deaminase.	0.901
LOC107564650	LOC107583806	ENSSGRP00000035202	ENSSGRP00000067304	Adenosine deaminase-like isoform X1.	AMP deaminase 3-like isoform X1.	0.414
LOC107569657	LOC107564650	ENSSGRP00000027602	ENSSGRP00000035202	AMP deaminase 3-like isoform X1.	Adenosine deaminase-like isoform X1.	0.414