(68 nodes) Catalytic step 2 spliceosome network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ess2	Protein DGCR14. (472 aa)
	ENSSGRP00000001771	Protein DGCR14-like. (290 aa)
	LOC107571110	Superkiller viralicidic activity 2-like 2 isoform X1. (1036 aa)
	ENSSGRP00000003929	Elongation factor Tu GTP-binding domain-containing protein 1-like. (689 aa)
	ppwd1	Peptidylprolyl isomerase domain and WD repeat-containing protein 1. (559 aa)
	cdc40	Cell division cycle 40. (502 aa)
	ENSSGRP00000008611	annotation not available (62 aa)
	LOC107557836	Heterogeneous nuclear ribonucleoprotein C-like isoform X1. (303 aa)
	ENSSGRP00000013227	Cell division cycle 40 homolog (S. cerevisiae). (302 aa)
	LOC107574081	Heterogeneous nuclear ribonucleoprotein C-like isoform X1. (288 aa)
	LOC107598186	Serine/threonine-protein kinase PRP4 homolog. (1016 aa)
	ENSSGRP00000016080	Pre-mRNA-splicing factor SPF27-like. (140 aa)
	LOC107599251	Cactin-like isoform X1. (823 aa)
	ENSSGRP00000021245	Peptidylprolyl isomerase domain and WD repeat-containing protein 1-like. (622 aa)
	ENSSGRP00000023340	annotation not available (217 aa)
	wdr83	Mitogen-activated protein kinase organizer 1. (331 aa)
	LOC107591625	U5 small nuclear ribonucleoprotein 40 kDa protein-like. (346 aa)
	syf2	Pre-mRNA-splicing factor SYF2. (238 aa)
	LOC107554880	RNA-binding Raly-like protein isoform X1. (291 aa)
	LOC107583602	Serine/arginine repetitive matrix protein 1-like isoform X1. (946 aa)
	wdr25	WD repeat-containing protein 25. (215 aa)
	eftud2	116 kDa U5 small nuclear ribonucleoprotein component. (980 aa)
	ENSSGRP00000036461	annotation not available (145 aa)
	ENSSGRP00000037092	WD repeat domain containing 83. (300 aa)
	LOC107599886	Serine/threonine-protein kinase PRP4 homolog isoform X1. (989 aa)
	BCAS2	Pre-mRNA-splicing factor SPF27. (229 aa)
	AQR	Aquarius intron-binding spliceosomal factor. (1215 aa)
	ENSSGRP00000046704	BCAS2 pre-mRNA processing factor. (80 aa)
	LOC107566606	Heterogeneous nuclear ribonucleoprotein C-like. (293 aa)
	LOC107582929	Serine/arginine repetitive matrix protein 1-like isoform X1. (877 aa)
	ENSSGRP00000052429	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16. (937 aa)
	ENSSGRP00000052432	annotation not available (120 aa)
	ENSSGRP00000052492	Mtr4 exosome RNA helicase. (1014 aa)
	ppil3	Peptidyl-prolyl cis-trans isomerase-like 3. (161 aa)
	ENSSGRP00000054889	CWC22 spliceosome associated protein homolog. (940 aa)
	Rbmx	Heterogeneous nuclear ribonucleoprotein G. (386 aa)
	ppie	Peptidyl-prolyl isomerase E (cyclophilin E). (328 aa)
	LOC107584443	Peptidyl-prolyl cis-trans isomerase-like 1. (163 aa)
	DDX41	DEAD-box helicase 41. (585 aa)
	LOC107557038	Serine/threonine-protein kinase PRP4 homolog. (985 aa)
	efl1	Elongation factor-like GTPase 1 isoform X1. (1152 aa)
	SNW1	SNW domain-containing protein 1. (548 aa)
	LOC107592276	Protein CWC15 homolog. (244 aa)
	LOC107560625	RNA-binding motif protein, X chromosome-like. (373 aa)
	ppil1	Peptidyl-prolyl cis-trans isomerase-like 1 isoform X1. (166 aa)
	ENSSGRP00000065776	annotation not available (105 aa)
	dhx38	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16. (1252 aa)
	ENSSGRP00000067252	Elongation factor Tu GTP binding domain containing 2. (801 aa)
	ENSSGRP00000069329	Probable ATP-dependent RNA helicase DDX41. (494 aa)
	ENSSGRP00000074139	Pre-mRNA-splicing factor CWC22 homolog. (876 aa)
	ddx23	Probable ATP-dependent RNA helicase DDX23. (807 aa)
	LOC107591375	Heterogeneous nuclear ribonucleoprotein C-like isoform X1. (310 aa)
	gpatch1	G patch domain-containing protein 1. (1016 aa)
	LOC107554117	Serine/arginine repetitive matrix protein 2-like isoform X1. (1300 aa)
	ENSSGRP00000082485	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like. (2114 aa)
	ENSSGRP00000086075	Probable ATP-dependent RNA helicase DDX23. (522 aa)
	ENSSGRP00000086077	annotation not available (171 aa)
	LOC107599660	RNA-binding Raly-like protein isoform X1. (291 aa)
	LOC107593559	U5 small nuclear ribonucleoprotein 40 kDa protein. (347 aa)
	ENSSGRP00000091073	SYF2 pre-mRNA-splicing factor. (222 aa)
	LOC107554722	Serine/threonine-protein kinase PRP4 homolog. (1045 aa)
	LOC107602857	U5 small nuclear ribonucleoprotein 200 kDa helicase. (2134 aa)
	ENSSGRP00000102383	annotation not available (396 aa)
	LOC107600224	Cactin-like. (821 aa)
	ENSSGRP00000108934	SNW domain containing 1. (489 aa)
	Dhx35	Probable ATP-dependent RNA helicase DHX35. (590 aa)
	ENSSGRP00000109172	Peptidylprolyl isomerase (cyclophilin)-like 3. (121 aa)
	LOC107583001	Serine/arginine repetitive matrix protein 2-like. (1307 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQR	BCAS2	ENSSGRP00000038555	ENSSGRP00000037679	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor SPF27.	0.976
AQR	Dhx35	ENSSGRP00000038555	ENSSGRP00000109139	Aquarius intron-binding spliceosomal factor.	Probable ATP-dependent RNA helicase DHX35.	0.809
AQR	ENSSGRP00000003929	ENSSGRP00000038555	ENSSGRP00000003929	Aquarius intron-binding spliceosomal factor.	Elongation factor Tu GTP-binding domain-containing protein 1-like.	0.800
AQR	ENSSGRP00000008611	ENSSGRP00000038555	ENSSGRP00000008611	Aquarius intron-binding spliceosomal factor.	annotation not available	0.800
AQR	ENSSGRP00000013227	ENSSGRP00000038555	ENSSGRP00000013227	Aquarius intron-binding spliceosomal factor.	Cell division cycle 40 homolog (S. cerevisiae).	0.988
AQR	ENSSGRP00000016080	ENSSGRP00000038555	ENSSGRP00000016080	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor SPF27-like.	0.976
AQR	ENSSGRP00000021245	ENSSGRP00000038555	ENSSGRP00000021245	Aquarius intron-binding spliceosomal factor.	Peptidylprolyl isomerase domain and WD repeat-containing protein 1-like.	0.735
AQR	ENSSGRP00000023340	ENSSGRP00000038555	ENSSGRP00000023340	Aquarius intron-binding spliceosomal factor.	annotation not available	0.998
AQR	ENSSGRP00000036461	ENSSGRP00000038555	ENSSGRP00000036461	Aquarius intron-binding spliceosomal factor.	annotation not available	0.990
AQR	ENSSGRP00000037092	ENSSGRP00000038555	ENSSGRP00000037092	Aquarius intron-binding spliceosomal factor.	WD repeat domain containing 83.	0.742
AQR	ENSSGRP00000046704	ENSSGRP00000038555	ENSSGRP00000046704	Aquarius intron-binding spliceosomal factor.	BCAS2 pre-mRNA processing factor.	0.976
AQR	ENSSGRP00000052429	ENSSGRP00000038555	ENSSGRP00000052429	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.	0.743
AQR	ENSSGRP00000052432	ENSSGRP00000038555	ENSSGRP00000052432	Aquarius intron-binding spliceosomal factor.	annotation not available	0.743
AQR	ENSSGRP00000054889	ENSSGRP00000038555	ENSSGRP00000054889	Aquarius intron-binding spliceosomal factor.	CWC22 spliceosome associated protein homolog.	0.970
AQR	ENSSGRP00000067252	ENSSGRP00000038555	ENSSGRP00000067252	Aquarius intron-binding spliceosomal factor.	Elongation factor Tu GTP binding domain containing 2.	0.990
AQR	ENSSGRP00000074139	ENSSGRP00000038555	ENSSGRP00000074139	Aquarius intron-binding spliceosomal factor.	Pre-mRNA-splicing factor CWC22 homolog.	0.970
AQR	ENSSGRP00000082485	ENSSGRP00000038555	ENSSGRP00000082485	Aquarius intron-binding spliceosomal factor.	LOW QUALITY PROTEIN: U5 small nuclear ribonucleoprotein 200 kDa helicase-like.	0.988
AQR	ENSSGRP00000086075	ENSSGRP00000038555	ENSSGRP00000086075	Aquarius intron-binding spliceosomal factor.	Probable ATP-dependent RNA helicase DDX23.	0.475
AQR	ENSSGRP00000086077	ENSSGRP00000038555	ENSSGRP00000086077	Aquarius intron-binding spliceosomal factor.	annotation not available	0.475
AQR	ENSSGRP00000091073	ENSSGRP00000038555	ENSSGRP00000091073	Aquarius intron-binding spliceosomal factor.	SYF2 pre-mRNA-splicing factor.	0.976