(35 nodes) Sperm midpiece network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CFAP58	Cilia- and flagella-associated protein 58. (618 aa)
	LOC107574418	Patched domain-containing protein 3-like. (928 aa)
	ENSSGRP00000031788	Neuromedin-K receptor-like. (400 aa)
	ENSSGRP00000031607	annotation not available (180 aa)
	ENSSGRP00000028487	annotation not available (628 aa)
	ENSSGRP00000024132	Neuromedin-K receptor-like. (379 aa)
	ENSSGRP00000019687	Patched domain-containing protein 3-like. (980 aa)
	ENSSGRP00000019681	annotation not available (388 aa)
	ENSSGRP00000019429	annotation not available (650 aa)
	ENSSGRP00000001718	Tachykinin receptor 1a. (135 aa)
	LOC107579495	Patched domain-containing protein 3-like. (521 aa)
	ENSSGRP00000004438	Cilia- and flagella-associated protein 69-like. (778 aa)
	ENSSGRP00000005798	Substance-P receptor-like. (136 aa)
	ENSSGRP00000006526	annotation not available (74 aa)
	ENSSGRP00000006625	annotation not available (80 aa)
	ENSSGRP00000009906	annotation not available (300 aa)
	ENSSGRP00000015179	annotation not available (144 aa)
	ENSSGRP00000015180	Patched domain-containing protein 3-like. (540 aa)
	LOC107574077	Patched domain-containing protein 3-like. (914 aa)
	LOC107594990	Substance-P receptor-like. (422 aa)
	ENSSGRP00000017876	annotation not available (143 aa)
	LOC107601831	Neuromedin-K receptor-like. (376 aa)
	ENSSGRP00000101156	annotation not available (273 aa)
	ENSSGRP00000095382	Coiled-coil domain-containing protein 172-like isoform X1. (253 aa)
	PTCHD3	Patched domain-containing protein 3-like. (859 aa)
	LOC107599657	Patched domain-containing protein 3-like. (989 aa)
	ENSSGRP00000086263	Substance-P receptor-like. (354 aa)
	LOC107589789	C-C chemokine receptor type 6-like. (378 aa)
	ENSSGRP00000084335	C-C chemokine receptor type 6-like. (348 aa)
	LOC107552719	Neuromedin-K receptor-like. (397 aa)
	LOC107556806	Neuromedin-K receptor-like. (397 aa)
	ENSSGRP00000067241	annotation not available (346 aa)
	LOC107549115	C-C chemokine receptor type 6-like. (377 aa)
	LOC107563044	Neuromedin-K receptor-like. (374 aa)
	ENSSGRP00000035501	Sperm flagellar 2. (1518 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000084335	LOC107549115	ENSSGRP00000084335	ENSSGRP00000055328	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.902
ENSSGRP00000084335	LOC107589789	ENSSGRP00000084335	ENSSGRP00000085733	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.900
LOC107549115	ENSSGRP00000084335	ENSSGRP00000055328	ENSSGRP00000084335	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.902
LOC107549115	LOC107589789	ENSSGRP00000055328	ENSSGRP00000085733	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.902
LOC107563044	LOC107601831	ENSSGRP00000045496	ENSSGRP00000102614	Neuromedin-K receptor-like.	Neuromedin-K receptor-like.	0.900
LOC107589789	ENSSGRP00000084335	ENSSGRP00000085733	ENSSGRP00000084335	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.900
LOC107589789	LOC107549115	ENSSGRP00000085733	ENSSGRP00000055328	C-C chemokine receptor type 6-like.	C-C chemokine receptor type 6-like.	0.902
LOC107601831	LOC107563044	ENSSGRP00000102614	ENSSGRP00000045496	Neuromedin-K receptor-like.	Neuromedin-K receptor-like.	0.900