(8 nodes) Glycosyl hydrolases family 15 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000025574	Phosphorylase kinase, alpha 1b (muscle). (857 aa)
	ENSSGRP00000017620	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like. (769 aa)
	LOC107590041	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like. (1233 aa)
	LOC107573346	Phosphorylase b kinase regulatory subunit alpha, liver isoform-like. (1217 aa)
	phka1	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1. (1233 aa)
	LOC107591034	Phosphorylase b kinase regulatory subunit beta-like isoform X1. (1094 aa)
	ENSSGRP00000096000	Phosphorylase kinase, alpha 2 (liver). (1081 aa)
	LOC107598686	Phosphorylase b kinase regulatory subunit beta-like isoform X1. (1087 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000017620	LOC107591034	ENSSGRP00000017620	ENSSGRP00000096733	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.749
ENSSGRP00000017620	LOC107598686	ENSSGRP00000017620	ENSSGRP00000072712	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.749
ENSSGRP00000025574	LOC107591034	ENSSGRP00000025574	ENSSGRP00000096733	Phosphorylase kinase, alpha 1b (muscle).	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.758
ENSSGRP00000025574	LOC107598686	ENSSGRP00000025574	ENSSGRP00000072712	Phosphorylase kinase, alpha 1b (muscle).	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.758
ENSSGRP00000096000	LOC107591034	ENSSGRP00000096000	ENSSGRP00000096733	Phosphorylase kinase, alpha 2 (liver).	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.743
ENSSGRP00000096000	LOC107598686	ENSSGRP00000096000	ENSSGRP00000072712	Phosphorylase kinase, alpha 2 (liver).	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.743
LOC107573346	LOC107591034	ENSSGRP00000011435	ENSSGRP00000096733	Phosphorylase b kinase regulatory subunit alpha, liver isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.973
LOC107573346	LOC107598686	ENSSGRP00000011435	ENSSGRP00000072712	Phosphorylase b kinase regulatory subunit alpha, liver isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.972
LOC107573346	phka1	ENSSGRP00000011435	ENSSGRP00000109035	Phosphorylase b kinase regulatory subunit alpha, liver isoform-like.	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1.	0.901
LOC107590041	LOC107591034	ENSSGRP00000016589	ENSSGRP00000096733	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.743
LOC107590041	LOC107598686	ENSSGRP00000016589	ENSSGRP00000072712	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.743
LOC107591034	ENSSGRP00000017620	ENSSGRP00000096733	ENSSGRP00000017620	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	0.749
LOC107591034	ENSSGRP00000025574	ENSSGRP00000096733	ENSSGRP00000025574	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase kinase, alpha 1b (muscle).	0.758
LOC107591034	ENSSGRP00000096000	ENSSGRP00000096733	ENSSGRP00000096000	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase kinase, alpha 2 (liver).	0.743
LOC107591034	LOC107573346	ENSSGRP00000096733	ENSSGRP00000011435	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit alpha, liver isoform-like.	0.973
LOC107591034	LOC107590041	ENSSGRP00000096733	ENSSGRP00000016589	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	0.743
LOC107591034	LOC107598686	ENSSGRP00000096733	ENSSGRP00000072712	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	0.900
LOC107591034	phka1	ENSSGRP00000096733	ENSSGRP00000109035	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform isoform X1.	0.973
LOC107598686	ENSSGRP00000017620	ENSSGRP00000072712	ENSSGRP00000017620	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform-like.	0.749
LOC107598686	ENSSGRP00000025574	ENSSGRP00000072712	ENSSGRP00000025574	Phosphorylase b kinase regulatory subunit beta-like isoform X1.	Phosphorylase kinase, alpha 1b (muscle).	0.758