(11 nodes) Ras association (RalGDS/AF-6) domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	Arap3	Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 3. (1596 aa)
	Snx27	Sorting nexin-27. (639 aa)
	ENSSGRP00000026873	Ras-interacting protein 1-like. (983 aa)
	ENSSGRP00000045566	Ras association domain-containing protein 5-like. (408 aa)
	ENSSGRP00000052148	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 3. (1627 aa)
	LOC107599501	Sorting nexin-27-like. (568 aa)
	RASSF4	Ras association domain-containing protein 4-like isoform X1. (222 aa)
	ENSSGRP00000078785	Sorting nexin-27-like. (449 aa)
	ENSSGRP00000092156	Ras association domain-containing protein 5-like. (422 aa)
	ENSSGRP00000109510	annotation not available (1259 aa)
	LOC107589480	Sorting nexin-27-like. (518 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000045566	ENSSGRP00000092156	ENSSGRP00000045566	ENSSGRP00000092156	Ras association domain-containing protein 5-like.	Ras association domain-containing protein 5-like.	0.900
ENSSGRP00000045566	RASSF4	ENSSGRP00000045566	ENSSGRP00000071800	Ras association domain-containing protein 5-like.	Ras association domain-containing protein 4-like isoform X1.	0.418
ENSSGRP00000092156	ENSSGRP00000045566	ENSSGRP00000092156	ENSSGRP00000045566	Ras association domain-containing protein 5-like.	Ras association domain-containing protein 5-like.	0.900
ENSSGRP00000092156	RASSF4	ENSSGRP00000092156	ENSSGRP00000071800	Ras association domain-containing protein 5-like.	Ras association domain-containing protein 4-like isoform X1.	0.418
RASSF4	ENSSGRP00000045566	ENSSGRP00000071800	ENSSGRP00000045566	Ras association domain-containing protein 4-like isoform X1.	Ras association domain-containing protein 5-like.	0.418
RASSF4	ENSSGRP00000092156	ENSSGRP00000071800	ENSSGRP00000092156	Ras association domain-containing protein 4-like isoform X1.	Ras association domain-containing protein 5-like.	0.418