(5 nodes) LSM domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107552258-2	U6 snRNA-associated Sm-like protein LSm2. (98 aa)
	lsm10	U7 snRNA-associated Sm-like protein LSm10. (120 aa)
	ENSSGRP00000070187	annotation not available (63 aa)
	LOC107557830	Small nuclear ribonucleoprotein Sm D2-like. (116 aa)
	ENSSGRP00000088471	annotation not available (93 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000070187	ENSSGRP00000088471	ENSSGRP00000070187	ENSSGRP00000088471	annotation not available	annotation not available	0.948
ENSSGRP00000070187	LOC107552258-2	ENSSGRP00000070187	ENSSGRP00000037274	annotation not available	U6 snRNA-associated Sm-like protein LSm2.	0.999
ENSSGRP00000070187	LOC107557830	ENSSGRP00000070187	ENSSGRP00000087163	annotation not available	Small nuclear ribonucleoprotein Sm D2-like.	0.993
ENSSGRP00000070187	lsm10	ENSSGRP00000070187	ENSSGRP00000008696	annotation not available	U7 snRNA-associated Sm-like protein LSm10.	0.948
ENSSGRP00000088471	ENSSGRP00000070187	ENSSGRP00000088471	ENSSGRP00000070187	annotation not available	annotation not available	0.948
ENSSGRP00000088471	LOC107552258-2	ENSSGRP00000088471	ENSSGRP00000037274	annotation not available	U6 snRNA-associated Sm-like protein LSm2.	0.979
ENSSGRP00000088471	LOC107557830	ENSSGRP00000088471	ENSSGRP00000087163	annotation not available	Small nuclear ribonucleoprotein Sm D2-like.	0.994
LOC107552258-2	ENSSGRP00000070187	ENSSGRP00000037274	ENSSGRP00000070187	U6 snRNA-associated Sm-like protein LSm2.	annotation not available	0.999
LOC107552258-2	ENSSGRP00000088471	ENSSGRP00000037274	ENSSGRP00000088471	U6 snRNA-associated Sm-like protein LSm2.	annotation not available	0.979
LOC107552258-2	LOC107557830	ENSSGRP00000037274	ENSSGRP00000087163	U6 snRNA-associated Sm-like protein LSm2.	Small nuclear ribonucleoprotein Sm D2-like.	0.999
LOC107552258-2	lsm10	ENSSGRP00000037274	ENSSGRP00000008696	U6 snRNA-associated Sm-like protein LSm2.	U7 snRNA-associated Sm-like protein LSm10.	0.979
LOC107557830	ENSSGRP00000070187	ENSSGRP00000087163	ENSSGRP00000070187	Small nuclear ribonucleoprotein Sm D2-like.	annotation not available	0.993
LOC107557830	ENSSGRP00000088471	ENSSGRP00000087163	ENSSGRP00000088471	Small nuclear ribonucleoprotein Sm D2-like.	annotation not available	0.994
LOC107557830	LOC107552258-2	ENSSGRP00000087163	ENSSGRP00000037274	Small nuclear ribonucleoprotein Sm D2-like.	U6 snRNA-associated Sm-like protein LSm2.	0.999
LOC107557830	lsm10	ENSSGRP00000087163	ENSSGRP00000008696	Small nuclear ribonucleoprotein Sm D2-like.	U7 snRNA-associated Sm-like protein LSm10.	0.994
lsm10	ENSSGRP00000070187	ENSSGRP00000008696	ENSSGRP00000070187	U7 snRNA-associated Sm-like protein LSm10.	annotation not available	0.948
lsm10	LOC107552258-2	ENSSGRP00000008696	ENSSGRP00000037274	U7 snRNA-associated Sm-like protein LSm10.	U6 snRNA-associated Sm-like protein LSm2.	0.979
lsm10	LOC107557830	ENSSGRP00000008696	ENSSGRP00000087163	U7 snRNA-associated Sm-like protein LSm10.	Small nuclear ribonucleoprotein Sm D2-like.	0.994