(24 nodes) Cation efflux family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107586956	Transmembrane protein 163-like. (286 aa)
	ENSSGRP00000112752	annotation not available (271 aa)
	ENSSGRP00000112751	annotation not available (193 aa)
	ENSSGRP00000112578	Solute carrier family 30 (zinc transporter), member 9. (574 aa)
	LOC107602182	Solute carrier family 30 (zinc transporter), member 2. (353 aa)
	slc30a4	Solute carrier family 30 (zinc transporter), member 4. (426 aa)
	LOC107598103	Solute carrier family 30 (zinc transporter), member 2. (353 aa)
	ENSSGRP00000090300	Solute carrier family 30 member 8. (657 aa)
	ENSSGRP00000089683	annotation not available (101 aa)
	ENSSGRP00000089680	Solute carrier family 30 (zinc transporter), member 1. (306 aa)
	ENSSGRP00000084802	Solute carrier family 30 member 6. (516 aa)
	LOC107588064	Solute carrier family 30 (zinc transporter), member 5/7. (383 aa)
	LOC107594702	Solute carrier family 30 (zinc transporter), member 1. (472 aa)
	ENSSGRP00000063110	Solute carrier family 30 (zinc transporter), member 8. (390 aa)
	slc30a6	Solute carrier family 30 member 6. (591 aa)
	LOC107601641	Solute carrier family 30 (zinc transporter), member 10. (357 aa)
	ENSSGRP00000052802	annotation not available (247 aa)
	LOC107600588	Solute carrier family 30 (zinc transporter), member 5/7. (777 aa)
	slc30a9	Solute carrier family 30 (zinc transporter), member 9. (573 aa)
	ENSSGRP00000037187	annotation not available (128 aa)
	ENSSGRP00000032211	Zinc transporter 10-like. (351 aa)
	ENSSGRP00000028834	annotation not available (217 aa)
	LOC107595996	Solute carrier family 30 (zinc transporter), member 5/7. (775 aa)
	LOC107592711	Solute carrier family 30 (zinc transporter), member 5/7. (379 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000028834	ENSSGRP00000037187	ENSSGRP00000028834	ENSSGRP00000037187	annotation not available	annotation not available	0.450
ENSSGRP00000028834	ENSSGRP00000084802	ENSSGRP00000028834	ENSSGRP00000084802	annotation not available	Solute carrier family 30 member 6.	0.609
ENSSGRP00000028834	ENSSGRP00000089683	ENSSGRP00000028834	ENSSGRP00000089683	annotation not available	annotation not available	0.460
ENSSGRP00000028834	ENSSGRP00000112578	ENSSGRP00000028834	ENSSGRP00000112578	annotation not available	Solute carrier family 30 (zinc transporter), member 9.	0.448
ENSSGRP00000028834	LOC107588064	ENSSGRP00000028834	ENSSGRP00000074383	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.442
ENSSGRP00000028834	LOC107592711	ENSSGRP00000028834	ENSSGRP00000002506	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.439
ENSSGRP00000028834	LOC107595996	ENSSGRP00000028834	ENSSGRP00000003770	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.421
ENSSGRP00000028834	LOC107600588	ENSSGRP00000028834	ENSSGRP00000049764	annotation not available	Solute carrier family 30 (zinc transporter), member 5/7.	0.417
ENSSGRP00000028834	LOC107601641	ENSSGRP00000028834	ENSSGRP00000056600	annotation not available	Solute carrier family 30 (zinc transporter), member 10.	0.482
ENSSGRP00000028834	slc30a6	ENSSGRP00000028834	ENSSGRP00000062263	annotation not available	Solute carrier family 30 member 6.	0.609
ENSSGRP00000028834	slc30a9	ENSSGRP00000028834	ENSSGRP00000047323	annotation not available	Solute carrier family 30 (zinc transporter), member 9.	0.448
ENSSGRP00000032211	ENSSGRP00000084802	ENSSGRP00000032211	ENSSGRP00000084802	Zinc transporter 10-like.	Solute carrier family 30 member 6.	0.500
ENSSGRP00000032211	ENSSGRP00000112578	ENSSGRP00000032211	ENSSGRP00000112578	Zinc transporter 10-like.	Solute carrier family 30 (zinc transporter), member 9.	0.478
ENSSGRP00000032211	slc30a4	ENSSGRP00000032211	ENSSGRP00000098122	Zinc transporter 10-like.	Solute carrier family 30 (zinc transporter), member 4.	0.460
ENSSGRP00000032211	slc30a6	ENSSGRP00000032211	ENSSGRP00000062263	Zinc transporter 10-like.	Solute carrier family 30 member 6.	0.500
ENSSGRP00000032211	slc30a9	ENSSGRP00000032211	ENSSGRP00000047323	Zinc transporter 10-like.	Solute carrier family 30 (zinc transporter), member 9.	0.478
ENSSGRP00000037187	ENSSGRP00000028834	ENSSGRP00000037187	ENSSGRP00000028834	annotation not available	annotation not available	0.450
ENSSGRP00000037187	ENSSGRP00000052802	ENSSGRP00000037187	ENSSGRP00000052802	annotation not available	annotation not available	0.400
ENSSGRP00000037187	ENSSGRP00000063110	ENSSGRP00000037187	ENSSGRP00000063110	annotation not available	Solute carrier family 30 (zinc transporter), member 8.	0.440
ENSSGRP00000037187	ENSSGRP00000084802	ENSSGRP00000037187	ENSSGRP00000084802	annotation not available	Solute carrier family 30 member 6.	0.505