(7 nodes) TGS domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000011601	threonyl-tRNA synthetase 1. (448 aa)
	LOC107567440	Developmentally-regulated GTP-binding protein 1. (366 aa)
	LOC107555524	Developmentally-regulated GTP-binding protein 1-like. (366 aa)
	LOC107553342	Threonine--tRNA ligase, cytoplasmic-like. (780 aa)
	ENSSGRP00000047477	Developmentally regulated GTP binding protein 2. (366 aa)
	LOC107591639	Developmentally-regulated GTP-binding protein 2. (364 aa)
	tars1	Threonine--tRNA ligase, cytoplasmic. (718 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000047477	LOC107555524	ENSSGRP00000047477	ENSSGRP00000042960	Developmentally regulated GTP binding protein 2.	Developmentally-regulated GTP-binding protein 1-like.	0.729
ENSSGRP00000047477	LOC107567440	ENSSGRP00000047477	ENSSGRP00000038060	Developmentally regulated GTP binding protein 2.	Developmentally-regulated GTP-binding protein 1.	0.729
LOC107553342	tars1	ENSSGRP00000045222	ENSSGRP00000099717	Threonine--tRNA ligase, cytoplasmic-like.	Threonine--tRNA ligase, cytoplasmic.	0.901
LOC107555524	ENSSGRP00000047477	ENSSGRP00000042960	ENSSGRP00000047477	Developmentally-regulated GTP-binding protein 1-like.	Developmentally regulated GTP binding protein 2.	0.729
LOC107555524	LOC107591639	ENSSGRP00000042960	ENSSGRP00000091949	Developmentally-regulated GTP-binding protein 1-like.	Developmentally-regulated GTP-binding protein 2.	0.728
LOC107567440	ENSSGRP00000047477	ENSSGRP00000038060	ENSSGRP00000047477	Developmentally-regulated GTP-binding protein 1.	Developmentally regulated GTP binding protein 2.	0.729
LOC107567440	LOC107591639	ENSSGRP00000038060	ENSSGRP00000091949	Developmentally-regulated GTP-binding protein 1.	Developmentally-regulated GTP-binding protein 2.	0.728
LOC107591639	LOC107555524	ENSSGRP00000091949	ENSSGRP00000042960	Developmentally-regulated GTP-binding protein 2.	Developmentally-regulated GTP-binding protein 1-like.	0.728
LOC107591639	LOC107567440	ENSSGRP00000091949	ENSSGRP00000038060	Developmentally-regulated GTP-binding protein 2.	Developmentally-regulated GTP-binding protein 1.	0.728
tars1	LOC107553342	ENSSGRP00000099717	ENSSGRP00000045222	Threonine--tRNA ligase, cytoplasmic.	Threonine--tRNA ligase, cytoplasmic-like.	0.901