(12 nodes) LEM domain network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107570965	Ankyrin repeat and LEM domain-containing protein 1. (808 aa)
	ENSSGRP00000013150	Si:ch211-150o23.2. (163 aa)
	ENSSGRP00000018836	annotation not available (178 aa)
	ENSSGRP00000044050	Zgc:92287. (240 aa)
	LOC107551414	Lamina-associated polypeptide 2-like isoform X1. (366 aa)
	LOC107560939	Emerin-like. (190 aa)
	LOC107570273	Emerin-like. (190 aa)
	ENSSGRP00000064121	Zgc:92287. (371 aa)
	LOC107597302	Ankyrin repeat and LEM domain-containing protein 2-like. (954 aa)
	LOC107590013	Lamina-associated polypeptide 2-like isoform X1. (682 aa)
	LOC107569350	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like. (408 aa)
	ENSSGRP00000086438	LEM domain containing 3. (781 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000086438	LOC107551414	ENSSGRP00000086438	ENSSGRP00000044299	LEM domain containing 3.	Lamina-associated polypeptide 2-like isoform X1.	0.442
ENSSGRP00000086438	LOC107560939	ENSSGRP00000086438	ENSSGRP00000049455	LEM domain containing 3.	Emerin-like.	0.843
ENSSGRP00000086438	LOC107569350	ENSSGRP00000086438	ENSSGRP00000075698	LEM domain containing 3.	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	0.442
ENSSGRP00000086438	LOC107570273	ENSSGRP00000086438	ENSSGRP00000050953	LEM domain containing 3.	Emerin-like.	0.843
ENSSGRP00000086438	LOC107590013	ENSSGRP00000086438	ENSSGRP00000069385	LEM domain containing 3.	Lamina-associated polypeptide 2-like isoform X1.	0.463
ENSSGRP00000086438	LOC107597302	ENSSGRP00000086438	ENSSGRP00000067306	LEM domain containing 3.	Ankyrin repeat and LEM domain-containing protein 2-like.	0.595
LOC107551414	ENSSGRP00000086438	ENSSGRP00000044299	ENSSGRP00000086438	Lamina-associated polypeptide 2-like isoform X1.	LEM domain containing 3.	0.442
LOC107551414	LOC107560939	ENSSGRP00000044299	ENSSGRP00000049455	Lamina-associated polypeptide 2-like isoform X1.	Emerin-like.	0.545
LOC107551414	LOC107570273	ENSSGRP00000044299	ENSSGRP00000050953	Lamina-associated polypeptide 2-like isoform X1.	Emerin-like.	0.545
LOC107560939	ENSSGRP00000086438	ENSSGRP00000049455	ENSSGRP00000086438	Emerin-like.	LEM domain containing 3.	0.843
LOC107560939	LOC107551414	ENSSGRP00000049455	ENSSGRP00000044299	Emerin-like.	Lamina-associated polypeptide 2-like isoform X1.	0.545
LOC107560939	LOC107569350	ENSSGRP00000049455	ENSSGRP00000075698	Emerin-like.	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	0.545
LOC107560939	LOC107590013	ENSSGRP00000049455	ENSSGRP00000069385	Emerin-like.	Lamina-associated polypeptide 2-like isoform X1.	0.607
LOC107560939	LOC107597302	ENSSGRP00000049455	ENSSGRP00000067306	Emerin-like.	Ankyrin repeat and LEM domain-containing protein 2-like.	0.779
LOC107569350	ENSSGRP00000086438	ENSSGRP00000075698	ENSSGRP00000086438	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	LEM domain containing 3.	0.442
LOC107569350	LOC107560939	ENSSGRP00000075698	ENSSGRP00000049455	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	Emerin-like.	0.545
LOC107569350	LOC107570273	ENSSGRP00000075698	ENSSGRP00000050953	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	Emerin-like.	0.545
LOC107570273	ENSSGRP00000086438	ENSSGRP00000050953	ENSSGRP00000086438	Emerin-like.	LEM domain containing 3.	0.843
LOC107570273	LOC107551414	ENSSGRP00000050953	ENSSGRP00000044299	Emerin-like.	Lamina-associated polypeptide 2-like isoform X1.	0.545
LOC107570273	LOC107569350	ENSSGRP00000050953	ENSSGRP00000075698	Emerin-like.	Lamina-associated polypeptide 2, isoforms beta/delta/epsilon/gamma-like.	0.545