(5 nodes) Paxillin family network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107553049	Endochitinase A-like. (688 aa)
	LOC107552183	Paxillin-like isoform X1. (818 aa)
	LOC107594545	Paxillin-like isoform X1. (793 aa)
	tgfb1i1	Transforming growth factor beta-1-induced transcript 1 protein isoform X1. (501 aa)
	ENSSGRP00000010219	Calphotin-like. (620 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000010219	LOC107552183	ENSSGRP00000010219	ENSSGRP00000014505	Calphotin-like.	Paxillin-like isoform X1.	0.908
ENSSGRP00000010219	LOC107594545	ENSSGRP00000010219	ENSSGRP00000028626	Calphotin-like.	Paxillin-like isoform X1.	0.901
LOC107552183	ENSSGRP00000010219	ENSSGRP00000014505	ENSSGRP00000010219	Paxillin-like isoform X1.	Calphotin-like.	0.908
LOC107552183	LOC107594545	ENSSGRP00000014505	ENSSGRP00000028626	Paxillin-like isoform X1.	Paxillin-like isoform X1.	0.911
LOC107594545	ENSSGRP00000010219	ENSSGRP00000028626	ENSSGRP00000010219	Paxillin-like isoform X1.	Calphotin-like.	0.901
LOC107594545	LOC107552183	ENSSGRP00000028626	ENSSGRP00000014505	Paxillin-like isoform X1.	Paxillin-like isoform X1.	0.911