(21 nodes) MreB/Mbl protein network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	LOC107561683	Heat shock 70 kDa protein 4L-like. (840 aa)
	LOC107586823	Heat shock 70 kDa protein 4L-like isoform X1. (886 aa)
	hspa13	Stress 70 protein chaperone microsome-associated 60kDa protein. (438 aa)
	ENSSGRP00000040543	Heat shock 70 kDa protein 4-like. (731 aa)
	ENSSGRP00000079211	Heat shock 70 kDa protein 4-like. (908 aa)
	ENSSGRP00000087297	Heat shock cognate 71 kDa protein-like isoform X1. (689 aa)
	LOC107580804	Heat shock 70 kDa protein 14-like. (504 aa)
	ENSSGRP00000092037	Heat shock protein 4b. (697 aa)
	LOC107572499	78 kDa glucose-regulated protein-like isoform X1. (667 aa)
	LOC107572500	78 kDa glucose-regulated protein-like. (657 aa)
	LOC107567952	Endoplasmic reticulum chaperone BiP. (675 aa)
	ENSSGRP00000026567	Heat shock cognate 71 kDa protein-like. (600 aa)
	ENSSGRP00000020588	78 kDa glucose-regulated protein-like. (323 aa)
	Hspa9	Stress-70 protein, mitochondrial. (664 aa)
	LOC107582617	Heat shock cognate 70 kDa protein. (625 aa)
	LOC107585770	Heat shock cognate 71 kDa protein-like. (634 aa)
	LOC107588517	Hypoxia up-regulated protein 1. (982 aa)
	LOC107592213	Heat shock 70 kDa protein 14. (504 aa)
	LOC107588586	Heat shock cognate 71 kDa protein. (668 aa)
	ENSSGRP00000059661	annotation not available (515 aa)
	ENSSGRP00000060191	Heat shock 70 kDa protein 1-like. (311 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000020588	ENSSGRP00000026567	ENSSGRP00000020588	ENSSGRP00000026567	78 kDa glucose-regulated protein-like.	Heat shock cognate 71 kDa protein-like.	0.713
ENSSGRP00000020588	ENSSGRP00000040543	ENSSGRP00000020588	ENSSGRP00000040543	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 4-like.	0.714
ENSSGRP00000020588	ENSSGRP00000059661	ENSSGRP00000020588	ENSSGRP00000059661	78 kDa glucose-regulated protein-like.	annotation not available	0.791
ENSSGRP00000020588	ENSSGRP00000060191	ENSSGRP00000020588	ENSSGRP00000060191	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 1-like.	0.710
ENSSGRP00000020588	ENSSGRP00000079211	ENSSGRP00000020588	ENSSGRP00000079211	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 4-like.	0.712
ENSSGRP00000020588	ENSSGRP00000087297	ENSSGRP00000020588	ENSSGRP00000087297	78 kDa glucose-regulated protein-like.	Heat shock cognate 71 kDa protein-like isoform X1.	0.708
ENSSGRP00000020588	ENSSGRP00000092037	ENSSGRP00000020588	ENSSGRP00000092037	78 kDa glucose-regulated protein-like.	Heat shock protein 4b.	0.715
ENSSGRP00000020588	Hspa9	ENSSGRP00000020588	ENSSGRP00000016455	78 kDa glucose-regulated protein-like.	Stress-70 protein, mitochondrial.	0.793
ENSSGRP00000020588	LOC107561683	ENSSGRP00000020588	ENSSGRP00000078570	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 4L-like.	0.745
ENSSGRP00000020588	LOC107580804	ENSSGRP00000020588	ENSSGRP00000089788	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 14-like.	0.722
ENSSGRP00000020588	LOC107582617	ENSSGRP00000020588	ENSSGRP00000006889	78 kDa glucose-regulated protein-like.	Heat shock cognate 70 kDa protein.	0.708
ENSSGRP00000020588	LOC107585770	ENSSGRP00000020588	ENSSGRP00000001917	78 kDa glucose-regulated protein-like.	Heat shock cognate 71 kDa protein-like.	0.708
ENSSGRP00000020588	LOC107586823	ENSSGRP00000020588	ENSSGRP00000044491	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 4L-like isoform X1.	0.744
ENSSGRP00000020588	LOC107588517	ENSSGRP00000020588	ENSSGRP00000046732	78 kDa glucose-regulated protein-like.	Hypoxia up-regulated protein 1.	0.980
ENSSGRP00000020588	LOC107588586	ENSSGRP00000020588	ENSSGRP00000053205	78 kDa glucose-regulated protein-like.	Heat shock cognate 71 kDa protein.	0.708
ENSSGRP00000020588	LOC107592213	ENSSGRP00000020588	ENSSGRP00000053162	78 kDa glucose-regulated protein-like.	Heat shock 70 kDa protein 14.	0.722
ENSSGRP00000020588	hspa13	ENSSGRP00000020588	ENSSGRP00000040783	78 kDa glucose-regulated protein-like.	Stress 70 protein chaperone microsome-associated 60kDa protein.	0.719
ENSSGRP00000026567	ENSSGRP00000020588	ENSSGRP00000026567	ENSSGRP00000020588	Heat shock cognate 71 kDa protein-like.	78 kDa glucose-regulated protein-like.	0.713
ENSSGRP00000026567	ENSSGRP00000040543	ENSSGRP00000026567	ENSSGRP00000040543	Heat shock cognate 71 kDa protein-like.	Heat shock 70 kDa protein 4-like.	0.698
ENSSGRP00000026567	ENSSGRP00000059661	ENSSGRP00000026567	ENSSGRP00000059661	Heat shock cognate 71 kDa protein-like.	annotation not available	0.704