(4 nodes) Anaphase-promoting complex, cyclosome, subunit 3 network (Sinocyclocheilus grahami)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ENSSGRP00000102567	Cell division cycle protein 27 homolog. (825 aa)
	LOC107595809	Cell division cycle protein 16 homolog. (616 aa)
	LOC107597489	Cell division cycle protein 16 homolog isoform X1. (616 aa)
	LOC107582914	Cell division cycle protein 27 homolog. (739 aa)

Your Current Organism:

Sinocyclocheilus grahami

NCBI taxonomy Id: 75366
Other names: S. grahami

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSGRP00000102567	LOC107595809	ENSSGRP00000102567	ENSSGRP00000066301	Cell division cycle protein 27 homolog.	Cell division cycle protein 16 homolog.	0.996
ENSSGRP00000102567	LOC107597489	ENSSGRP00000102567	ENSSGRP00000082180	Cell division cycle protein 27 homolog.	Cell division cycle protein 16 homolog isoform X1.	0.996
LOC107582914	LOC107595809	ENSSGRP00000095323	ENSSGRP00000066301	Cell division cycle protein 27 homolog.	Cell division cycle protein 16 homolog.	0.996
LOC107582914	LOC107597489	ENSSGRP00000095323	ENSSGRP00000082180	Cell division cycle protein 27 homolog.	Cell division cycle protein 16 homolog isoform X1.	0.996
LOC107595809	ENSSGRP00000102567	ENSSGRP00000066301	ENSSGRP00000102567	Cell division cycle protein 16 homolog.	Cell division cycle protein 27 homolog.	0.996
LOC107595809	LOC107582914	ENSSGRP00000066301	ENSSGRP00000095323	Cell division cycle protein 16 homolog.	Cell division cycle protein 27 homolog.	0.996
LOC107595809	LOC107597489	ENSSGRP00000066301	ENSSGRP00000082180	Cell division cycle protein 16 homolog.	Cell division cycle protein 16 homolog isoform X1.	0.900
LOC107597489	ENSSGRP00000102567	ENSSGRP00000082180	ENSSGRP00000102567	Cell division cycle protein 16 homolog isoform X1.	Cell division cycle protein 27 homolog.	0.996
LOC107597489	LOC107582914	ENSSGRP00000082180	ENSSGRP00000095323	Cell division cycle protein 16 homolog isoform X1.	Cell division cycle protein 27 homolog.	0.996
LOC107597489	LOC107595809	ENSSGRP00000082180	ENSSGRP00000066301	Cell division cycle protein 16 homolog isoform X1.	Cell division cycle protein 16 homolog.	0.900