STRINGSTRING
Tint_0251 Tint_0251 Tint_0305 Tint_0305 Tint_0808 Tint_0808 Tint_0914 Tint_0914 Tint_1179 Tint_1179 Tint_1256 Tint_1256 Tint_1267 Tint_1267 Tint_1830 Tint_1830 Tint_2517 Tint_2517 Tint_2642 Tint_2642 Tint_2797 Tint_2797 Tint_2830 Tint_2830
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tint_0251TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; KEGG: rru:Rru_A1908 response regulator receiver modulated diguanylate cyclase; SMART: GGDEF domain containing protein. (530 aa)
Tint_0305Diguanylate phosphodiesterase; KEGG: aca:ACP_0922 bacterial signalling protein N terminal repeat/GGDEF/EAL domain protein; PFAM: EAL domain protein; SMART: EAL domain protein. (263 aa)
Tint_0808TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: aav:Aave_2043 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein. (451 aa)
Tint_0914Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: hna:Hneap_0485 diguanylate cyclase with PAS/PAC and GAF sensors; SMART: GGDEF domain containing protein; GAF domain protein. (720 aa)
Tint_1179Diguanylate phosphodiesterase with GAF sensor(s); KEGG: bxe:Bxe_B2627 GAF sensor diguanylate phosphsdiesterase; PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein. (696 aa)
Tint_1256TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; CBS domain containing protein; GGDEF domain containing protein; KEGG: har:HEAR1023 hypothetical protein; SMART: EAL domain protein; GGDEF domain containing protein. (607 aa)
Tint_1267Diguanylate phosphodiesterase; Manually curated; PFAM: EAL domain protein; KEGG: noc:Noc_0349 diguanylate cyclase/phosphodiesterase; SMART: EAL domain protein. (265 aa)
Tint_1830TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-3 domain protein; PAS fold domain protein; KEGG: hna:Hneap_1141 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein. (440 aa)
Tint_2517Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; PAS fold-4 domain protein; KEGG: rfr:Rfer_2893 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein; EAL domain protein. (840 aa)
Tint_2642KEGG: dar:Daro_2752 metal-dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region. (454 aa)
Tint_2797TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: vvy:VVA0406 GGDEF family protein; SMART: GGDEF domain containing protein. (400 aa)
Tint_2830TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: hna:Hneap_1260 diguanylate cyclase with PAS/PAC sensor; SMART: GGDEF domain containing protein; PAS domain containing protein; PAC repeat-containing protein. (420 aa)
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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