STRINGSTRING
Tint_2999 Tint_2999 Tint_1123 Tint_1123 Tint_1529 Tint_1529 Tint_1569 Tint_1569 recR recR Tint_1855 Tint_1855 Tint_1993 Tint_1993 Tint_2181 Tint_2181 recO recO Tint_2603 Tint_2603 Tint_2783 Tint_2783 Tint_2835 Tint_2835
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tint_2999PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0992 putative transcriptional regulator of paa operon. (212 aa)
Tint_1123PFAM: regulatory protein TetR; KEGG: swi:Swit_3704 TetR family transcriptional regulator. (202 aa)
Tint_1529PFAM: restriction endonuclease; KEGG: rfr:Rfer_1819 restriction endonuclease. (306 aa)
Tint_1569PFAM: regulatory protein TetR; KEGG: rme:Rmet_3914 TetR family transcriptional regulator. (224 aa)
recRRecombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (203 aa)
Tint_1855Conserved hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa)
Tint_1993PFAM: regulatory protein TetR; KEGG: bph:Bphy_4679 TetR family transcriptional regulator. (231 aa)
Tint_2181TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family; PFAM: RQC domain; DEAD/DEAH box helicase domain protein; helicase domain protein; HRDC domain protein; KEGG: bgl:bglu_1g02520 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase; helicase domain protein; HRDC domain protein. (617 aa)
recODNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (266 aa)
Tint_2603PFAM: regulatory protein TetR; KEGG: mpt:Mpe_A0420 TetR family regulatory protein. (262 aa)
Tint_2783PFAM: restriction endonuclease; KEGG: afw:Anae109_1084 restriction endonuclease. (307 aa)
Tint_2835DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (558 aa)
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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