STRINGSTRING
Tint_0057 Tint_0057 Tint_2699 Tint_2699 dusB dusB Tint_2729 Tint_2729 Tint_2733 Tint_2733 Tint_2994 Tint_2994 Tint_3000 Tint_3000 mnmG mnmG Tint_1298 Tint_1298 Tint_1261 Tint_1261 Tint_1255 Tint_1255 Tint_1040 Tint_1040 Tint_0731 Tint_0731 Tint_0688 Tint_0688 Tint_0626 Tint_0626 Tint_0625 Tint_0625 Tint_0606 Tint_0606 Tint_0605 Tint_0605 Tint_0248 Tint_0248 Tint_0058 Tint_0058 Tint_2647 Tint_2647 Tint_2641 Tint_2641 Tint_2602 Tint_2602 mnmC mnmC Tint_2351 Tint_2351 Tint_2348 Tint_2348 Tint_2338 Tint_2338 Tint_2305 Tint_2305 Tint_2154 Tint_2154 dusA dusA Tint_1808 Tint_1808 Tint_1784 Tint_1784 Tint_1781 Tint_1781 Tint_1734 Tint_1734 Tint_1694 Tint_1694 Tint_1634 Tint_1634 merA merA Tint_1601 Tint_1601 Tint_1600 Tint_1600 Tint_1593 Tint_1593 Tint_1589 Tint_1589 Tint_1571 Tint_1571 Tint_1359 Tint_1359 Tint_1357 Tint_1357 Tint_1353 Tint_1353 Tint_1352 Tint_1352 Tint_1346 Tint_1346 murB murB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tint_0057KEGG: pca:Pcar_1486 dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region. (467 aa)
Tint_2699Hypothetical protein; KEGG: rpi:Rpic_3135 ubiquinone biosynthesis hydroxylase family protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD dependent oxidoreductase. (402 aa)
dusBTIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (350 aa)
Tint_2729PFAM: acyl-CoA dehydrogenase domain protein; KEGG: lch:Lcho_4207 acyl-CoA dehydrogenase domain-containing protein. (375 aa)
Tint_2733PFAM: acyl-CoA dehydrogenase domain protein; KEGG: ajs:Ajs_3779 isovaleryl-CoA dehydrogenase. (392 aa)
Tint_2994PFAM: monooxygenase FAD-binding; KEGG: eba:ebA3297 FAD-dependent oxidoreductase. (558 aa)
Tint_3000phenylacetate-CoA oxygenase/reductase, PaaK subunit; KEGG: mpt:Mpe_A0991 putative ring-hydroxylation complex protein 4; TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; ferredoxin. (360 aa)
mnmGGlucose inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family. (676 aa)
Tint_1298PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: maq:Maqu_0437 glucose-methanol-choline oxidoreductase. (528 aa)
Tint_1261Glycine oxidase ThiO; KEGG: pol:Bpro_0038 FAD dependent oxidoreductase; TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase. (365 aa)
Tint_1255Flavoprotein WrbA; KEGG: afr:AFE_0460 trp repressor binding protein; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase. (200 aa)
Tint_1040PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mpt:Mpe_A1496 thioredoxin reductase. (363 aa)
Tint_0731Choline dehydrogenase; KEGG: dia:Dtpsy_0243 glucose-methanol-choline oxidoreductase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase. (561 aa)
Tint_0688PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pol:Bpro_2961 acyl-CoA dehydrogenase-like. (405 aa)
Tint_0626PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A3774 putative oxidoreductase. (468 aa)
Tint_0625PFAM: BLUF domain protein; KEGG: kko:Kkor_2136 BLUF domain protein. (159 aa)
Tint_0606PFAM: FAD linked oxidase domain protein; KEGG: vap:Vapar_0222 FAD linked oxidase domain protein. (497 aa)
Tint_0605PFAM: FAD linked oxidase domain protein; KEGG: azo:azo1000 glycolate oxidase FAD binding subunit. (374 aa)
Tint_0248PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mpt:Mpe_A3170 glutaryl-CoA dehydrogenase. (393 aa)
Tint_0058KEGG: xcb:XC_1470 hypothetical protein; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (409 aa)
Tint_2647PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lch:Lcho_1818 FAD-dependent pyridine nucleotide-disulphide oxidoreductase. (428 aa)
Tint_2641PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: pol:Bpro_0858 FAD linked oxidase-like. (1330 aa)
Tint_2602PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rso:RSc0473 putative acyl-CoA dehydrogenase oxidoreductase protein. (598 aa)
mnmCtRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (737 aa)
Tint_2351Alkyl hydroperoxide reductase, F subunit; KEGG: ctt:CtCNB1_1177 FAD-dependent pyridine nucleotide-disulphide; TIGRFAM: alkyl hydroperoxide reductase, F subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutaredoxin. (529 aa)
Tint_2348PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; KEGG: afr:AFE_0950 oxidoreductase, GMC family. (417 aa)
Tint_2338KEGG: bur:Bcep18194_B2150 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase, flavoprotein subunit; succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. (587 aa)
Tint_2305KEGG: vap:Vapar_2165 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; biotin/lipoyl attachment domain-containing protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region. (603 aa)
Tint_2154KEGG: lch:Lcho_2893 acetolactate synthase 3 catalytic subunit; TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP-binding. (596 aa)
dusATIM-barrel protein, yjbN family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs; Belongs to the Dus family. DusA subfamily. (349 aa)
Tint_1808PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afo:Afer_0293 pyridine nucleotide-disulphide oxidoreductase dimerization region. (475 aa)
Tint_1784PFAM: protein of unknown function DUF482; KEGG: vap:Vapar_2359 protein of unknown function DUF482. (390 aa)
Tint_1781PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin; KEGG: aav:Aave_0164 oxidoreductase FAD-binding subunit. (353 aa)
Tint_1734PFAM: acyl-CoA dehydrogenase domain protein; KEGG: pzu:PHZ_p0173 acyl-CoA dehydrogenase. (543 aa)
Tint_1694KEGG: reu:Reut_B4026 CBS:protein of unknown function DUF21:transporter-associated region; PFAM: protein of unknown function DUF21; CBS domain containing protein; transporter-associated region; SMART: CBS domain containing protein. (445 aa)
Tint_1634Xanthine dehydrogenase, small subunit; KEGG: acr:Acry_1155 molybdopterin dehydrogenase, FAD-binding; TIGRFAM: xanthine dehydrogenase, small subunit; PFAM: molybdopterin dehydrogenase FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein. (530 aa)
merAMercuric reductase; Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0). Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family. (556 aa)
Tint_1601PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bpe:BP0652 acyl-CoA dehydrogenase. (374 aa)
Tint_1600PFAM: acyl-CoA dehydrogenase domain protein; KEGG: bvi:Bcep1808_2317 acyl-CoA dehydrogenase domain-containing protein. (394 aa)
Tint_1593PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rfr:Rfer_2384 acyl-CoA dehydrogenase-like. (609 aa)
Tint_1589PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rce:RC1_1018 acyl-CoA dehydrogenase, putative. (413 aa)
Tint_1571PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: bur:Bcep18194_C6778 glucose-methanol-choline oxidoreductase. (536 aa)
Tint_1359PFAM: FAD linked oxidase domain protein; KEGG: mpt:Mpe_A1420 putative oxidoreductase protein. (476 aa)
Tint_1357Flavoprotein WrbA; KEGG: cti:RALTA_A1221 putative TRP repressor binding protein WrbA, multimeric flavodoxin; TIGRFAM: flavoprotein WrbA; PFAM: flavodoxin/nitric oxide synthase; Belongs to the WrbA family. (198 aa)
Tint_1353PFAM: acyl-CoA dehydrogenase domain protein; KEGG: mpt:Mpe_A1298 putative acyl-CoA dehydrogenase oxidoreductase protein. (594 aa)
Tint_1352PFAM: Electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha/beta-subunit; KEGG: vap:Vapar_3373 electron transfer flavoprotein alpha subunit. (310 aa)
Tint_1346KEGG: bpt:Bpet1834 dihydrolipoamide dehydrogenase; TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region. (477 aa)
murBUDP-N-acetylenolpyruvoylglucosamine reductase; Cell wall formation. (341 aa)
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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