STRINGSTRING
Tint_0601 Tint_0601 Tint_0727 Tint_0727 Tint_2933 Tint_2933 Tint_2473 Tint_2473 Tint_1179 Tint_1179 Tint_1169 Tint_1169 Tint_0914 Tint_0914 Tint_0710 Tint_0710
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Tint_0601Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; PAS fold-4 domain protein; KEGG: hna:Hneap_1694 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: EAL domain protein; GGDEF domain containing protein; PAC repeat-containing protein; GAF domain protein. (1119 aa)
Tint_0727Putative signal transduction protein; PFAM: Metal-dependent hydrolase HDOD; GAF domain protein; KEGG: tgr:Tgr7_0557 putative signal transduction protein. (473 aa)
Tint_2933KEGG: bam:Bamb_3845 LuxR family transcriptional regulator; PFAM: regulatory protein LuxR; SMART: regulatory protein LuxR. (379 aa)
Tint_2473KEGG: dia:Dtpsy_0423 GAF sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; histidine kinase HAMP region domain protein; GAF domain protein; SMART: histidine kinase HAMP region domain protein; ATP-binding region ATPase domain protein. (643 aa)
Tint_1179Diguanylate phosphodiesterase with GAF sensor(s); KEGG: bxe:Bxe_B2627 GAF sensor diguanylate phosphsdiesterase; PFAM: EAL domain protein; GAF domain protein; SMART: EAL domain protein. (696 aa)
Tint_1169Diguanylate cyclase/phosphodiesterase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; KEGG: hna:Hneap_1694 diguanylate cyclase/phosphodiesterase with GAF sensor; SMART: GGDEF domain containing protein; GAF domain protein; EAL domain protein. (1494 aa)
Tint_0914Diguanylate cyclase with GAF sensor; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; KEGG: hna:Hneap_0485 diguanylate cyclase with PAS/PAC and GAF sensors; SMART: GGDEF domain containing protein; GAF domain protein. (720 aa)
Tint_0710KEGG: azo:azo1538 putative phosphoenolpyruvate-protein phosphotransferase; PFAM: GAF domain protein; pyridoxamine 5'-phosphate oxidase-related FMN-binding; SMART: GAF domain protein. (449 aa)
Your Current Organism:
Thiomonas intermedia
NCBI taxonomy Id: 75379
Other names: T. intermedia K12, Thiobacillus intermedius K12, Thiomonas intermedia K12, Thiomonas intermedia str. K12, Thiomonas intermedia strain K12
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