STRINGSTRING
Q7C_13 Q7C_13 Q7C_1312 Q7C_1312 Q7C_14 Q7C_14 Q7C_1625 Q7C_1625 Q7C_2315 Q7C_2315 Q7C_2581 Q7C_2581 Q7C_2582 Q7C_2582 Q7C_2583 Q7C_2583 Q7C_2584 Q7C_2584 Q7C_2585 Q7C_2585 Q7C_701 Q7C_701 Q7C_703 Q7C_703 Q7C_704 Q7C_704 Q7C_706 Q7C_706
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q7C_13Hypothetical protein; PFAM: EAL domain; HAMP domain; GGDEF domain; TIGRFAM: diguanylate cyclase (GGDEF) domain. (632 aa)
Q7C_1312PFAM: Bacterial protein of unknown function (DUF920). (238 aa)
Q7C_14PFAM: Bacterial protein of unknown function (DUF920). (221 aa)
Q7C_1625PFAM: Protein of unknown function (DUF2927). (210 aa)
Q7C_2315RTX toxins-related Ca2+-binding protein; PFAM: von Willebrand factor type A domain; TIGRFAM: T1SS-143 repeat domain; VCBS repeat. (4182 aa)
Q7C_2581Hypothetical protein. (270 aa)
Q7C_2582ABC-type bacteriocin/lantibiotic exporters peptidase domain protein; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; TIGRFAM: type I secretion system ABC transporter, HlyB family. (735 aa)
Q7C_2583PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family. (466 aa)
Q7C_2584Hypothetical protein. (160 aa)
Q7C_2585Alkaline phosphatase; PFAM: Hemolysin-type calcium-binding repeat (2 copies); Haemolysin-type calcium binding protein related domain; Putative Ig domain. (2717 aa)
Q7C_701PFAM: Outer membrane efflux protein; TIGRFAM: type I secretion outer membrane protein, TolC family. (439 aa)
Q7C_703TIGRFAM: type I secretion membrane fusion protein, HlyD family. (346 aa)
Q7C_704ABC transporter, transmembrane region:ABC transporter:Peptidase C39, bacteriocin processing; PFAM: ABC transporter transmembrane region; ABC transporter; Peptidase C39 family; TIGRFAM: type I secretion system ATPase, LssB family. (726 aa)
Q7C_706Hypothetical protein. (112 aa)
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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