STRINGSTRING
Q7C_1716 Q7C_1716 Q7C_1807 Q7C_1807 Q7C_182 Q7C_182 Q7C_1825 Q7C_1825 Q7C_1832 Q7C_1832 Q7C_1836 Q7C_1836 Q7C_1944 Q7C_1944 slmA slmA Q7C_2343 Q7C_2343 Q7C_2345 Q7C_2345 Q7C_2617 Q7C_2617 Q7C_322 Q7C_322 Q7C_364 Q7C_364 Q7C_399 Q7C_399 Q7C_433 Q7C_433 Q7C_53 Q7C_53 ntrC ntrC Q7C_757 Q7C_757 Q7C_803 Q7C_803 Q7C_90 Q7C_90 Q7C_996 Q7C_996
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q7C_1716PFAM: Transposase. (102 aa)
Q7C_1807Response regulator of zinc sigma-54-dependent two-component system; PFAM: Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (310 aa)
Q7C_182Putative transcriptional regulator, AraC/XylS family. (326 aa)
Q7C_1825PFAM: Bacterial regulatory protein, Fis family; Belongs to the transcriptional regulatory Fis family. (96 aa)
Q7C_1832Transcriptional Regulator, AraC family. (316 aa)
Q7C_1836PFAM: Bacterial regulatory proteins, tetR family. (202 aa)
Q7C_1944Nitrogen assimilation regulatory protein NtrX; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (424 aa)
slmATranscriptional regulator SlmA, TetR family; Required for nucleoid occlusion (NO) phenomenon, which prevents Z-ring formation and cell division over the nucleoid. Acts as a DNA-associated cell division inhibitor that binds simultaneously chromosomal DNA and FtsZ, and disrupts the assembly of FtsZ polymers. SlmA-DNA-binding sequences (SBS) are dispersed on non-Ter regions of the chromosome, preventing FtsZ polymerization at these regions. (205 aa)
Q7C_2343PFAM: Flagellar regulatory protein FleQ; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (489 aa)
Q7C_2345Flagellar regulatory protein FleQ; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (453 aa)
Q7C_2617Mobile element protein; PFAM: Transposase. (99 aa)
Q7C_322PFAM: Transposase. (98 aa)
Q7C_364Transcriptional regulator, AraC family. (341 aa)
Q7C_399DNA-binding domain-containing protein, AraC-type. (308 aa)
Q7C_433Type IV fimbriae expression regulatory protein PilR; PFAM: Response regulator receiver domain; Bacterial regulatory protein, Fis family; Sigma-54 interaction domain. (461 aa)
Q7C_53PFAM: AraC-type transcriptional regulator N-terminus. (310 aa)
ntrCNitrogen regulation protein NR(I); Member of the two-component regulatory system NtrB/NtrC, which controls expression of the nitrogen-regulated (ntr) genes in response to nitrogen limitation. Phosphorylated NtrC binds directly to DNA and stimulates the formation of open promoter-sigma54-RNA polymerase complexes. (467 aa)
Q7C_757PFAM: AraC-type transcriptional regulator N-terminus. (311 aa)
Q7C_803PFAM: Mor transcription activator family. (109 aa)
Q7C_90Anaerobic nitric oxide reductase transcription regulator NorR; PFAM: GAF domain; Sigma-54 interaction domain. (525 aa)
Q7C_996Transcriptional regulator, AraC family. (335 aa)
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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