STRINGSTRING
Q7C_190 Q7C_190 fur fur Q7C_1063 Q7C_1063 Q7C_1070 Q7C_1070 Q7C_1227 Q7C_1227 Q7C_1231 Q7C_1231 Q7C_124 Q7C_124 Q7C_1309 Q7C_1309 Q7C_1345 Q7C_1345 Q7C_1357 Q7C_1357 Q7C_1460 Q7C_1460 Q7C_1563 Q7C_1563 Q7C_1652 Q7C_1652 ruvB ruvB Q7C_1817 Q7C_1817 Q7C_1872 Q7C_1872 Q7C_1904 Q7C_1904 Q7C_1937 Q7C_1937 Q7C_194 Q7C_194 Q7C_1987 Q7C_1987 Q7C_1992 Q7C_1992 rpoD rpoD Q7C_2026 Q7C_2026 Q7C_2031 Q7C_2031 Q7C_2041 Q7C_2041 Q7C_2063 Q7C_2063 Q7C_2068 Q7C_2068 Q7C_2080 Q7C_2080 Q7C_2106 Q7C_2106 Q7C_215 Q7C_215 Q7C_2175 Q7C_2175 Q7C_221 Q7C_221 Q7C_227 Q7C_227 Q7C_2281 Q7C_2281 Q7C_237 Q7C_237 Q7C_241 Q7C_241 Q7C_2488 Q7C_2488 Q7C_2492 Q7C_2492 Q7C_2692 Q7C_2692 Q7C_278 Q7C_278 Q7C_312 Q7C_312 Q7C_330 Q7C_330 Q7C_346 Q7C_346 Q7C_36 Q7C_36 Q7C_424 Q7C_424 Q7C_429 Q7C_429 Q7C_566 Q7C_566 rpoH rpoH Q7C_658 Q7C_658 Q7C_702 Q7C_702 Q7C_742 Q7C_742 Q7C_752 Q7C_752 Q7C_760 Q7C_760 Q7C_817 Q7C_817 Q7C_82 Q7C_82 Q7C_914 Q7C_914 Q7C_958 Q7C_958 Q7C_97 Q7C_97
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Q7C_190Putative sigma-70 factor, ECF subfamily; PFAM: Sigma-70, region 4. (114 aa)
furFerric uptake regulation protein FUR; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (140 aa)
Q7C_1063PFAM: Response regulator receiver domain; ANTAR domain. (206 aa)
Q7C_1070PFAM: MarR family. (171 aa)
Q7C_1227Copper-sensing two-component system response regulator CpxR; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (225 aa)
Q7C_1231Transcriptional regulator, MarR family. (166 aa)
Q7C_124RNA polymerase sigma factor RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily. (203 aa)
Q7C_1309PFAM: MarR family; AsnC family. (160 aa)
Q7C_1345methylated-DNA-protein-cysteine S-methyltransferase-like protein; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. (101 aa)
Q7C_1357Two component transcriptional regulator, winged helix family; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (234 aa)
Q7C_1460Molybdopterin biosynthesis protein MoeA / Periplasmic molybdate-binding domain protein; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; TIGRFAM: ModE molybdate transport repressor domain. (358 aa)
Q7C_1563PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (242 aa)
Q7C_1652Cell division protein FtsK; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family. (766 aa)
ruvBHolliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (338 aa)
Q7C_1817PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal; TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB. (229 aa)
Q7C_1872PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (316 aa)
Q7C_1904Transcriptional regulatory protein, ArsR family. (97 aa)
Q7C_1937Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake; PFAM: DNA recombination-mediator protein A; TIGRFAM: DNA protecting protein DprA. (358 aa)
Q7C_194Organic hydroperoxide resistance transcriptional regulator; PFAM: MarR family. (151 aa)
Q7C_1987Fumarate and nitrate reduction regulatory protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (249 aa)
Q7C_1992Hydrogen peroxide-inducible genes activator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)
rpoDRNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (612 aa)
Q7C_2026Transcriptional activator MetR; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (302 aa)
Q7C_2031Organic hydroperoxide resistance transcriptional regulator; PFAM: MarR family. (139 aa)
Q7C_2041Transcriptional regulator, Crp/Fnr family; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (240 aa)
Q7C_2063PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (200 aa)
Q7C_2068Nitrite-sensitive transcriptional repressor NsrR; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein. (143 aa)
Q7C_2080PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (322 aa)
Q7C_2106Arsenical resistance operon repressor; PFAM: Bacterial regulatory protein, arsR family. (113 aa)
Q7C_215Cyclic AMP receptor protein; PFAM: Bacterial regulatory proteins, crp family; Cyclic nucleotide-binding domain. (240 aa)
Q7C_2175ATP-dependent DNA helicase RecQ; PFAM: Helicase conserved C-terminal domain; RQC domain; HRDC domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecQ; ATP-dependent DNA helicase, RecQ family. (708 aa)
Q7C_221Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family. (120 aa)
Q7C_227SOS-response repressor and protease LexA; Represses a number of genes involved in the response to DNA damage (SOS response). (199 aa)
Q7C_2281PFAM: Ribonuclease BN-like family; TIGRFAM: YihY family protein (not ribonuclease BN). (448 aa)
Q7C_237ADA regulatory protein / Methylated-DNA--protein-cysteine methyltransferase; PFAM: 6-O-methylguanine DNA methyltransferase, DNA binding domain; TIGRFAM: O-6-methylguanine DNA methyltransferase. (170 aa)
Q7C_241PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (302 aa)
Q7C_2488Hydrogen peroxide-inducible genes activator; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family. (303 aa)
Q7C_2492Zinc uptake regulation protein ZUR; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (154 aa)
Q7C_2692Transcriptional regulator, GntR family domain / Aspartate aminotransferase; PFAM: Aminotransferase class I and II; Bacterial regulatory proteins, gntR family. (464 aa)
Q7C_278Iron-sulfur cluster regulator IscR; PFAM: Transcriptional regulator; TIGRFAM: Rrf2 family protein; FeS assembly SUF system regulator, gammaproteobacterial. (162 aa)
Q7C_312PFAM: Transcriptional regulator; TIGRFAM: iron-sulfur cluster assembly transcription factor IscR; Rrf2 family protein. (148 aa)
Q7C_330PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (232 aa)
Q7C_346Putative regulatory protein associated with the ectoine operon; PFAM: MarR family. (194 aa)
Q7C_36PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (225 aa)
Q7C_424Copper-sensing two-component system response regulator CpxR; PFAM: Response regulator receiver domain; Transcriptional regulatory protein, C terminal. (227 aa)
Q7C_429RNA polymerase sigma factor RpoE; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; RNA polymerase sigma factor RpoE; Belongs to the sigma-70 factor family. ECF subfamily. (191 aa)
Q7C_566Transcriptional regulator, MarR family. (170 aa)
rpoHRNA polymerase sigma factor RpoH; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (287 aa)
Q7C_658Arsenical resistance operon repressor. (122 aa)
Q7C_702Regulatory protein, LuxR; PFAM: Response regulator receiver domain; Bacterial regulatory proteins, luxR family. (220 aa)
Q7C_742PFAM: MarR family; TIGRFAM: EPS-associated transcriptional regulator, MarR family. (127 aa)
Q7C_752PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (303 aa)
Q7C_760Zinc uptake regulation protein ZUR; PFAM: Ferric uptake regulator family; Belongs to the Fur family. (152 aa)
Q7C_817Transcriptional regulator, IclR family; PFAM: IclR helix-turn-helix domain. (99 aa)
Q7C_82cAMP-binding protein; PFAM: Cyclic nucleotide-binding domain. (239 aa)
Q7C_914Cys regulon transcriptional activator CysB; PFAM: Bacterial regulatory helix-turn-helix protein, lysR family; LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (306 aa)
Q7C_958Transcriptional regulator, LysR family; PFAM: LysR substrate binding domain; Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family. (335 aa)
Q7C_97Two-component system response regulator QseB; PFAM: Transcriptional regulatory protein, C terminal. (58 aa)
Your Current Organism:
Methylophaga frappieri
NCBI taxonomy Id: 754477
Other names: ATCC BAA-2434, DSM 25690, M. frappieri, Methylophaga frappieri Villeneuve et al. 2013, Methylophaga sp. JAM7, strain JAM7
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