(11 nodes) Fructose and mannose metabolism network (Paraburkholderia sprentiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APA84746.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	APA84748.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	APA87565.1	4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family. (342 aa)
	APA87566.1	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (391 aa)
	APA89168.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (444 aa)
	APA87933.1	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	APA87934.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APA87935.1	Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (346 aa)
	APA89246.1	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (431 aa)
	APA89318.1	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
	rhmD	L-rhamnonate dehydratase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR). (392 aa)

Your Current Organism:

Paraburkholderia sprentiae

NCBI taxonomy Id: 754502
Other names: Burkholderia sp. WSM5005, Burkholderia sprentiae WSM5005, P. sprentiae WSM5005, Paraburkholderia sprentiae WSM5005

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APA84746.1	APA84748.1	BJG93_04595	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
APA84746.1	APA87935.1	BJG93_04595	BJG93_21195	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.962
APA84746.1	APA89246.1	BJG93_04595	BJG93_22600	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.947
APA84748.1	APA84746.1	BJG93_04605	BJG93_04595	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
APA84748.1	APA87934.1	BJG93_04605	BJG93_21190	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
APA84748.1	APA87935.1	BJG93_04605	BJG93_21195	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.930
APA84748.1	APA89246.1	BJG93_04605	BJG93_22600	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.918
APA87565.1	APA87566.1	BJG93_18980	BJG93_18985	4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family.	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.843
APA87565.1	APA89168.1	BJG93_18980	BJG93_18990	4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.678
APA87566.1	APA87565.1	BJG93_18985	BJG93_18980	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family.	0.843
APA87566.1	APA87934.1	BJG93_18985	BJG93_21190	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.458
APA87566.1	APA89168.1	BJG93_18985	BJG93_18990	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.714
APA87566.1	APA89318.1	BJG93_18985	BJG93_25600	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.900
APA87566.1	rhmD	BJG93_18985	BJG93_25605	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	L-rhamnonate dehydratase; Catalyzes the dehydration of L-rhamnonate to 2-keto-3-deoxy- L-rhamnonate (KDR).	0.919
APA87933.1	APA87934.1	BJG93_21185	BJG93_21190	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.813
APA87933.1	APA87935.1	BJG93_21185	BJG93_21195	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Pyridoxal 4-dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.741
APA87933.1	APA89246.1	BJG93_21185	BJG93_22600	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Fuconate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.925
APA87933.1	APA89318.1	BJG93_21185	BJG93_25600	NAD(P)-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-oxoacyl-ACP reductase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the short-chain dehydrogenases/reductases (SDR) family.	0.920
APA87934.1	APA84748.1	BJG93_21190	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
APA87934.1	APA87566.1	BJG93_21190	BJG93_18985	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	L-rhamnonate dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the mandelate racemase/muconate lactonizing enzyme family.	0.458