(17 nodes) Metal-dependent hydrolase, composite domain superfamily network (Paraburkholderia sprentiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APA84446.1	Cytosine deaminase; Catalyzes the deamination of cytosine to uracil and ammonia; Derived by automated computational analysis using gene prediction method: Protein Homology. (433 aa)
	APA88325.1	Enamidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	APA89248.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (440 aa)
	APA87767.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (499 aa)
	APA87766.1	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (452 aa)
	APA87763.1	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (496 aa)
	APA87661.1	Formylmethanofuran dehydrogenase subunit A; Derived by automated computational analysis using gene prediction method: Protein Homology. (564 aa)
	APA87411.1	Phosphonate metabolism protein PhnM; Derived by automated computational analysis using gene prediction method: Protein Homology. (377 aa)
	APA85895.1	N-acetylglucosamine-6-phosphate deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	APA85838.1	D-aminoacylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	APA85656.1	Dihydroorotase; Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa)
	ureC	Urease subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (568 aa)
	hutI	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	APA85206.1	Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa)
	APA85083.1	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	APA84615.1	8-oxoguanine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (462 aa)
	APA84133.1	Guanine deaminase; Catalyzes the hydrolytic deamination of guanine, producing xanthine and ammonia; Belongs to the metallo-dependent hydrolases superfamily. ATZ/TRZ family. (459 aa)

Your Current Organism:

Paraburkholderia sprentiae

NCBI taxonomy Id: 754502
Other names: Burkholderia sp. WSM5005, Burkholderia sprentiae WSM5005, P. sprentiae WSM5005, Paraburkholderia sprentiae WSM5005

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APA85083.1	APA87763.1	BJG93_06580	BJG93_20145	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APA85206.1	hutI	BJG93_07265	BJG93_07270	Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994
APA87763.1	APA85083.1	BJG93_20145	BJG93_06580	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.917
APA87763.1	APA87766.1	BJG93_20145	BJG93_20165	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APA87766.1	APA87763.1	BJG93_20165	BJG93_20145	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Dihydropyrimidinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.486
APA87766.1	APA87767.1	BJG93_20165	BJG93_20190	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
APA87767.1	APA87766.1	BJG93_20190	BJG93_20165	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
hutI	APA85206.1	BJG93_07270	BJG93_07265	Imidazolonepropionase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Formimidoylglutamate deiminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.994