(9 nodes) Amidohydrolase network (Paraburkholderia sprentiae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	APA87934.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa)
	APA87619.1	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	APA87716.1	4-hydroxyphenyl-beta-ketoacyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (294 aa)
	APA84740.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
	APA84746.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (264 aa)
	APA84748.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa)
	APA89170.1	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (341 aa)
	APA87618.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (283 aa)
	APA88690.1	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)

Your Current Organism:

Paraburkholderia sprentiae

NCBI taxonomy Id: 754502
Other names: Burkholderia sp. WSM5005, Burkholderia sprentiae WSM5005, P. sprentiae WSM5005, Paraburkholderia sprentiae WSM5005

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APA84740.1	APA84748.1	BJG93_04565	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APA84746.1	APA84748.1	BJG93_04595	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
APA84746.1	APA88690.1	BJG93_04595	BJG93_25625	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APA84748.1	APA84740.1	BJG93_04605	BJG93_04565	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.419
APA84748.1	APA84746.1	BJG93_04605	BJG93_04595	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.679
APA84748.1	APA87619.1	BJG93_04605	BJG93_19290	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APA84748.1	APA87934.1	BJG93_04605	BJG93_21190	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
APA84748.1	APA88690.1	BJG93_04605	BJG93_25625	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
APA84748.1	APA89170.1	BJG93_04605	BJG93_19085	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
APA87618.1	APA87619.1	BJG93_19285	BJG93_19290	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
APA87618.1	APA89170.1	BJG93_19285	BJG93_19085	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
APA87619.1	APA84748.1	BJG93_19290	BJG93_04605	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APA87619.1	APA87618.1	BJG93_19290	BJG93_19285	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.811
APA87619.1	APA89170.1	BJG93_19290	BJG93_19085	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901
APA87934.1	APA84748.1	BJG93_21190	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.587
APA88690.1	APA84746.1	BJG93_25625	BJG93_04595	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.748
APA88690.1	APA84748.1	BJG93_25625	BJG93_04605	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.512
APA89170.1	APA84748.1	BJG93_19085	BJG93_04605	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
APA89170.1	APA87618.1	BJG93_19085	BJG93_19285	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Amidohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.451
APA89170.1	APA87619.1	BJG93_19085	BJG93_19290	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-oxalomesaconate hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.901