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| | ADY62089.1 | KEGG: plm:Plim_1699 hypothetical protein; SPTR: Putative uncharacterized protein. (1175 aa) |
| | ADY58893.1 | Hypothetical protein; InterPro IPR018391; KEGG: plm:Plim_2733 hypothetical protein; SPTR: Putative uncharacterized protein. (561 aa) |
| | ADY58897.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: plm:Plim_2943 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein; PFAM: PQQ enzyme repeat. (719 aa) |
| | ADY58898.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1677 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase related protein; PFAM: PQQ enzyme repeat. (737 aa) |
| | ADY58909.1 | Protein of unknown function DUF368; COGs: COG2035 membrane protein; InterPro IPR007163; KEGG: rba:RB7433 hypothetical protein; PFAM: Protein of unknown function DUF368; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function (DUF368). (324 aa) |
| | ADY58938.1 | KEGG: act:ACLA_028100 hypothetical protein; SPTR: Putative uncharacterized protein. (388 aa) |
| | ADY58943.1 | KEGG: plm:Plim_0727 hypothetical protein; SPTR: Putative uncharacterized protein. (176 aa) |
| | ADY59018.1 | KEGG: plm:Plim_1978 hypothetical protein; SPTR: Putative uncharacterized protein. (487 aa) |
| | flhA | Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family. (721 aa) |
| | ADY59022.1 | COGs: COG1419 Flagellar GTP-binding protein; InterPro IPR020006: IPR000897: IPR003593; KEGG: psl:Psta_3558 GTP-binding signal recognition particle SRP54 G-domain protein; PFAM: Signal recognition particle, SRP54 subunit, GTPase; SMART: ATPase, AAA+ type, core; SPTR: GTP-binding signal recognition particle SRP54, G-domain; TIGRFAM: Signal-recognition particle (SRP)-type GTPase; manually curated; PFAM: SRP54-type protein, GTPase domain; TIGRFAM: flagellar biosynthetic protein FlhF. (437 aa) |
| | ADY59084.1 | KEGG: plm:Plim_4264 hypothetical protein; SPTR: Putative uncharacterized protein. (277 aa) |
| | ADY59134.1 | Peptidase A24A prepilin type IV; COGs: COG4960 Flp pilus assembly protein protease CpaA; InterPro IPR000045; KEGG: plm:Plim_0796 peptidase A24A prepilin type IV; PFAM: Peptidase A24A, prepilin type IV; SPTR: Peptidase A24A prepilin type IV; PFAM: Type IV leader peptidase family. (182 aa) |
| | ADY59138.1 | Pyrrolo-quinoline quinone beta-propeller repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: rba:RB5380 serine/threonine protein kinase; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Probable serine/threonine protein kinase. (439 aa) |
| | ADY59221.1 | InterPro IPR018391: IPR002372; KEGG: psl:Psta_4521 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Putative uncharacterized protein. (445 aa) |
| | ADY59271.1 | KEGG: rba:RB1444 TPR repeat-containing protein; SPTR: Probable tetratricopeptide repeat family protein. (253 aa) |
| | ADY59319.1 | KEGG: mbr:MONBRDRAFT_33793 hypothetical protein; SPTR: Putative uncharacterized protein. (656 aa) |
| | ADY59341.1 | Hypothetical protein; KEGG: plm:Plim_2943 pyrrolo-quinoline quinone; SPTR: Putative uncharacterized protein. (460 aa) |
| | ADY59464.1 | Iron-sulfur cluster assembly accessory protein; COGs: COG0316 conserved hypothetical protein; InterPro IPR016092: IPR000361; KEGG: plm:Plim_2978 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; SPTR: Iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: Iron-sulphur cluster biosynthesis; TIGRFAM: Iron-sulfur cluster assembly accessory protein; Belongs to the HesB/IscA family. (110 aa) |
| | ADY59498.1 | Serine-type D-Ala-D-Ala carboxypeptidase; COGs: COG1686 D-alanyl-D-alanine carboxypeptidase; InterPro IPR001967; KEGG: psl:Psta_1647 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: Peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; PFAM: D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (302 aa) |
| | ADY60141.1 | DNA gyrase subunit A; COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR005743: IPR002205: IPR006691; KEGG: plm:Plim_2267 DNA gyrase, A subunit; PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: DNA gyrase subunit A; TIGRFAM: DNA gyrase, subunit A; PFAM: DNA gyrase/topoisomerase IV, subunit A; DNA gyrase C-terminal domain, beta-propeller; TIGRFAM: DNA gyrase, A [...] (952 aa) |
| | ruvB | Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (351 aa) |
| | ADY60075.1 | Type III secretion system inner membrane R protein; COGs: COG1684 Flagellar biosynthesis pathway component FliR; InterPro IPR002010; KEGG: plm:Plim_4065 type III secretion system inner membrane R protein; PFAM: Type III secretion system inner membrane R protein; SPTR: Flagellar biosynthetic protein fliR/B; PFAM: Bacterial export proteins, family 1. (330 aa) |
| | ADY59551.1 | KEGG: psl:Psta_0754 pyrrolo-quinoline quinone; SPTR: Putative uncharacterized protein. (449 aa) |
| | ADY59581.1 | InterPro IPR005632; KEGG: plm:Plim_0920 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Putative uncharacterized protein; PFAM: Outer membrane protein (OmpH-like). (255 aa) |
| | ADY59620.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_3570 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Pyrrolo-quinoline quinone. (460 aa) |
| | ADY59639.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_2941 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Probable serine/threonine protein kinase related protein; PFAM: PQQ enzyme repeat. (387 aa) |
| | ADY59641.1 | Hypothetical protein; KEGG: plm:Plim_2944 pyrrolo-quinoline quinone; SPTR: Pyrrolo-quinoline quinone. (639 aa) |
| | rplW | LSU ribosomal protein L23P; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (102 aa) |
| | rpsS | SSU ribosomal protein S19P; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (89 aa) |
| | rplV | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (114 aa) |
| | rpsK | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (126 aa) |
| | smc | Chromosome segregation protein SMC; Required for chromosome condensation and partitioning. Belongs to the SMC family. (1315 aa) |
| | ADY59768.1 | SpoVG family protein; COGs: COG2088 Uncharacterized protein involved in the regulation of septum location; InterPro IPR007170; KEGG: plm:Plim_2770 SpoVG family protein; PFAM: Sporulation stage V, protein G; SPTR: SpoVG family protein; PFAM: SpoVG; Belongs to the SpoVG family. (244 aa) |
| | ADY59784.1 | Hypothetical protein; InterPro IPR018391; KEGG: plm:Plim_2630 pyrrolo-quinoline quinone; SPTR: Putative uncharacterized protein. (1596 aa) |
| | ADY59889.1 | Hypothetical protein; COGs: COG1196 Chromosome segregation ATPase; InterPro IPR003660; KEGG: lma:LmjF34.0690 hypothetical protein; SPTR: Putative uncharacterized protein. (1866 aa) |
| | ADY59923.1 | Pyrrolo-quinoline quinone; COGs: COG1520 FOG: WD40-like repeat; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; SPTR: Probable serine/threonine protein kinase afsK. (420 aa) |
| | ADY59948.1 | Forkhead-associated protein; COGs: COG1196 Chromosome segregation ATPase; InterPro IPR000253; KEGG: plm:Plim_1306 forkhead-associated protein; PFAM: Forkhead-associated; SPTR: Putative uncharacterized protein. (1144 aa) |
| | ADY59952.1 | DNA gyrase subunit B; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594: IPR001241: IPR013506: IPR006171: IPR 002288; KEGG: plm:Plim_0450 DNA topoisomerase type IIA subunit B region 2 domain protein; PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; PFAM: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; [...] (826 aa) |
| | csrA-7 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (66 aa) |
| | priA | Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (787 aa) |
| | ADY60000.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: plm:Plim_0221 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Putative uncharacterized protein. (496 aa) |
| | ADY60012.1 | UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: plm:Plim_1235 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase. (665 aa) |
| | ADY60017.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: psl:Psta_3389 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Probable polyvinylalcohol dehydrogenase. (433 aa) |
| | ADY60044.1 | KEGG: plm:Plim_0258 pyrrolo-quinoline quinone; SPTR: Putative uncharacterized protein. (406 aa) |
| | ADY60064.1 | InterPro IPR021136; KEGG: psl:Psta_4346 flagellar hook-length control protein; PFAM: Flagellar hook-length control protein-like, C-terminal domain; SPTR: Flagellar hook-length control protein; PFAM: Flagellar hook-length control protein FliK. (574 aa) |
| | ADY60065.1 | COGs: COG1843 Flagellar hook capping protein; InterPro IPR005648; KEGG: plm:Plim_3102 flagellar hook capping protein; PFAM: Flagellar hook capping protein; SPTR: Probable basal-body rod modification protein FlgD; PFAM: Flagellar hook capping protein. (160 aa) |
| | ADY60072.1 | Hypothetical protein; KEGG: plm:Plim_4068 flagellar biosynthesis protein FliO; SPTR: Putative uncharacterized protein; PFAM: Flagellar biosynthesis protein, FliO. (361 aa) |
| | fliP | Flagellar biosynthetic protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. (340 aa) |
| | fliQ | Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (88 aa) |
| | ADY58463.1 | COGs: COG1207 N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains); InterPro IPR005835; KEGG: plm:Plim_3650 glucosamine-1-phosphate N-acetyltransferase; PFAM: Nucleotidyl transferase; PRIAM: Glucosamine-1-phosphate N-acetyltransferase; SPTR: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; TIGRFAM: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. (247 aa) |
| | mfd | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1114 aa) |
| | ADY58422.1 | ATP-dependent DNA helicase, Rep family; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: plm:Plim_0849 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent DNA helicase; PFAM: UvrD/REP helicase. (770 aa) |
| | ADY58404.1 | AAA ATPase; InterPro IPR003593; KEGG: plm:Plim_3352 AAA ATPase; SMART: ATPase, AAA+ type, core; SPTR: Putative uncharacterized protein. (560 aa) |
| | ADY58377.1 | Tetratricopeptide TPR_1 repeat-containing protein; COGs: COG4105 DNA uptake lipoprotein; InterPro IPR001440: IPR019734; KEGG: plm:Plim_3586 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SPTR: Putative uncharacterized protein. (1054 aa) |
| | ADY58332.1 | DNA helicase II; COGs: COG0210 Superfamily I DNA and RNA helicase; KEGG: pha:PSHAa1096 DNA helicase II; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase. (613 aa) |
| | yidC | Membrane protein oxaA; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins. Aids folding of multispanning membrane proteins. (680 aa) |
| | murA | UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (447 aa) |
| | prfA | Bacterial peptide chain release factor 1 (bRF-1); Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA. (358 aa) |
| | ADY58132.1 | SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR000330: IPR001650: IPR014001; KEGG: plm:Plim_0368 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Swi/snf family helicase_2; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (610 aa) |
| | ADY58125.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase afsK; PFAM: PQQ enzyme repeat. (445 aa) |
| | ADY58124.1 | KEGG: plm:Plim_4007 hypothetical protein; SPTR: Probable alcohol dehydrogenase (Acceptor). (439 aa) |
| | ADY58115.1 | InterPro IPR005632; KEGG: plm:Plim_1209 outer membrane chaperone Skp (OmpH); PFAM: Outer membrane chaperone Skp (OmpH); SPTR: Outer membrane chaperone Skp (OmpH); PFAM: Outer membrane protein (OmpH-like). (321 aa) |
| | der | Ribosome-associated GTPase EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. (450 aa) |
| | rsfS | Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (167 aa) |
| | ADY58065.1 | KEGG: mxa:MXAN_6478 hypothetical protein; SPTR: Putative uncharacterized protein. (465 aa) |
| | ADY58055.1 | GTP-binding protein TypA; COGs: COG1217 membrane GTPase involved in stress response; InterPro IPR005225: IPR006298: IPR000795: IPR004161: IPR 000640; KEGG: plm:Plim_1239 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: Putative uncharacterized protein; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/Bip [...] (618 aa) |
| | ADY58015.1 | COGs: COG3970 Fumarylacetoacetate (FAA) hydrolase family protein; InterPro IPR002529; KEGG: plm:Plim_2320 fumarylacetoacetate (FAA) hydrolase; PFAM: Fumarylacetoacetase, C-terminal-like; SPTR: Probable 2-hydroxyhepta-2,4-diene-1,7-dioate isomaerase; PFAM: Fumarylacetoacetate (FAA) hydrolase family. (286 aa) |
| | ADY57897.1 | COGs: COG0771 UDP-N-acetylmuramoylalanine-D-glutamate ligase; InterPro IPR013221: IPR004101: IPR005762; KEGG: plm:Plim_1571 UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; PRIAM: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase; SPTR: UDP-N-acetylmuramoylalanine--D-glutamate ligase; TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; PFAM: Mur ligase middle domain; TIGRFAM: UDP-N-acetylmuramoylalanine--D-glutamate ligase. (443 aa) |
| | ADY57886.1 | Hypothetical protein; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins. Belongs to the ZipA family. (339 aa) |
| | ADY57845.1 | KEGG: msv:Mesil_1196 hypothetical protein; SPTR: Putative uncharacterized protein. (144 aa) |
| | ADY57782.1 | KEGG: plm:Plim_0945 hypothetical protein; SPTR: Putative uncharacterized protein. (294 aa) |
| | ADY57759.1 | Flagellar protein FliS; COGs: COG1516 Flagellin-specific chaperone FliS; InterPro IPR003713; KEGG: plm:Plim_1692 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: Flagellar protein FliS; PFAM: Flagellar protein FliS; TIGRFAM: flagellar biosynthetic protein FliS. (152 aa) |
| | ADY57754.1 | Twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482: IPR006321; KEGG: plm:Plim_1933 twitching motility protein; PFAM: Type II secretion system protein E; SPTR: Twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (381 aa) |
| | ADY57749.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: psl:Psta_1741 FOG: WD40 repeat-like protein; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Pyrrolo-quinoline quinone. (434 aa) |
| | ADY57724.1 | DNA topoisomerase IV subunit B; COGs: COG0187 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) B subunit; InterPro IPR003594: IPR013506: IPR006171: IPR002288: IPR 001241; KEGG: plm:Plim_0105 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit B, domain 2; ATPase-like, ATP-binding domain; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit B/N-terminal; ATPase-like, ATP-binding domain; SPTR: DNA gyrase subunit B; PFAM: Histidine kinase-, DNA gyra [...] (639 aa) |
| | ADY57723.1 | COGs: COG0188 Type IIA topoisomerase (DNA gyrase/topo II topoisomerase IV) A subunit; InterPro IPR002205: IPR006691; KEGG: plm:Plim_0106 DNA topoisomerase (ATP-hydrolyzing); PFAM: DNA topoisomerase, type IIA, subunit A/C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; PRIAM: DNA topoisomerase (ATP-hydrolyzing); SMART: DNA topoisomerase, type IIA, subunit A/C-terminal; SPTR: Type II DNA topoisomerase, A subunit; PFAM: DNA gyrase C-terminal domain, beta-propeller; DNA gyrase/topoisomerase IV, subunit A. (785 aa) |
| | ADY57719.1 | COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827: IPR000184: IPR016474; KEGG: plm:Plim_2365 outer membrane protein assembly complex, YaeT protein; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Outer membrane protein assembly complex, YaeT protein; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Surface antigen variable number repeat; Surface antigen; TIGRFAM: outer membrane protein assembly complex, YaeT protein. (1126 aa) |
| | ADY57680.1 | KEGG: psl:Psta_4193 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF87. (838 aa) |
| | ADY57662.1 | InterPro IPR002541; KEGG: plm:Plim_1297 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Cytochrome c assembly protein; PFAM: Cytochrome C assembly protein. (308 aa) |
| | ruvA | Holliday junction DNA helicase subunit RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (208 aa) |
| | ADY61673.1 | PQQ repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB8085 PQQ repeat-containing protein; SPTR: Putative uncharacterized protein; tmRNA as predicted by Rfam (RF00023), score 159.15. (457 aa) |
| | ADY62348.1 | Cytochrome c assembly protein; COGs: COG0755 ABC-type transport system involved in cytochrome c biogenesis permease component; InterPro IPR002541; KEGG: plm:Plim_0023 cytochrome c assembly protein; PFAM: Cytochrome c assembly protein; SPTR: Probable cytochrome c-type biogenesis protein; PFAM: Cytochrome C assembly protein; ResB-like family. (1253 aa) |
| | ADY62259.1 | Peptidase A24A prepilin type IV; InterPro IPR000045; KEGG: plm:Plim_1819 peptidase A24A prepilin type IV; PFAM: Peptidase A24A, prepilin type IV; SPTR: Putative uncharacterized protein; PFAM: Type IV leader peptidase family. (188 aa) |
| | uppP | Undecaprenyl-diphosphatase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family. (268 aa) |
| | mraY | Phospho-N-acetylmuramoyl-pentapeptide- transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily. (367 aa) |
| | ADY62192.1 | COGs: COG1104 Cysteine sulfinate desulfinase/cysteine desulfurase; InterPro IPR000192; KEGG: plm:Plim_3794 cysteine desulfurase; PFAM: Aminotransferase, class V/Cysteine desulfurase; PRIAM: Cysteine desulfurase; SPTR: Cysteine desulfurase; PFAM: Aminotransferase class-V. (383 aa) |
| | ADY62158.1 | COGs: COG1261 Flagellar basal body P-ring biosynthesis protein; InterPro IPR013974: IPR017585; KEGG: plm:Plim_2704 flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; SPTR: Flageller protein FlgA; TIGRFAM: Flagella basal body P-ring formation protein FlgA; PFAM: SAF domain; TIGRFAM: flagella basal body P-ring formation protein FlgA. (447 aa) |
| | flgK | COGs: COG1256 Flagellar hook-associated protein; InterPro IPR010930: IPR002371; KEGG: plm:Plim_2709 flagellar hook-associated protein FlgK; PFAM: Protein of unknown function DUF1078, C-terminal; SPTR: Probable flagellar hook-associated protein; TIGRFAM: Flagellar hook-associated protein, FlgK; PFAM: Domain of unknown function (DUF1078); TIGRFAM: flagellar hook-associated protein FlgK. (565 aa) |
| | ADY62144.1 | Protein-disulfide reductase; COGs: COG4232 Thiol:disulfide interchange protein; InterPro IPR003834; KEGG: plm:Plim_0535 cytochrome c biogenesis protein transmembrane region; PFAM: Cytochrome c assembly protein, transmembrane domain; PRIAM: Protein-disulfide reductase; SPTR: Cytochrome c biogenesis protein transmembrane region; PFAM: Protein of unknown function, DUF255; Cytochrome C biogenesis protein transmembrane region. (879 aa) |
| | ADY62127.1 | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (329 aa) |
| | ADY62126.1 | COGs: COG1181 D-alanine-D-alanine ligase and related ATP-grasp protein; InterPro IPR011095; KEGG: sfu:Sfum_0713 D-alanine--D-alanine ligase domain-containing protein; PFAM: D-alanine--D-alanine ligase, C-terminal; SPTR: D-alanine--D-alanine ligase domain protein; PFAM: D-ala D-ala ligase C-terminus; TIGRFAM: D-alanine--D-alanine ligase. (349 aa) |
| | ADY62071.1 | Hypothetical protein; COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB8639 hypothetical protein; SPTR: Pyrrolo-quinoline quinone. (494 aa) |
| | ADY62037.1 | KEGG: ava:Ava_4088 hypothetical protein; SPTR: Putative uncharacterized protein. (390 aa) |
| | rpsG | SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (157 aa) |
| | ADY62003.1 | KEGG: psl:Psta_3367 pyrrolo-quinoline quinone; SPTR: Pyrrolo-quinoline quinone. (436 aa) |
| | ADY61983.1 | SNF2-related protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: plm:Plim_2303 SNF2-related protein; PFAM: SNF2-related; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: Snf2 family protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (1120 aa) |
| | ADY61962.1 | KEGG: psl:Psta_2757 secretion protein HlyD; SPTR: Probable toxin secretion protein. (493 aa) |
| | murJ | Integral membrane protein MviN; Involved in peptidoglycan biosynthesis. Transports lipid- linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane. (541 aa) |
| | frr | Ribosome recycling factor; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family. (186 aa) |
| | ADY61776.1 | Glycosyl transferase, family 4, conserved region-containing protein; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: rba:RB6472 putative undecaprenyl-phosphate N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Putative undecaprenyl-phosphate N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4. (515 aa) |
| | ADY61692.1 | CRISPR-associated protein, Csd5d family; InterPro IPR013422: IPR010155: IPR021124; KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; PFAM: CRISPR-associated protein, Cas5; SPTR: CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5, N-terminal domain; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain. (220 aa) |
| | ADY61690.1 | CRISPR-associated protein, Csd2 family; COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482: IPR013418; KEGG: ddd:Dda3937_02860 CRISPR-associated protein, TM1801 family; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein, TM1801 family; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family. (295 aa) |
| | ADY61687.1 | CRISPR-associated protein, Cas1 family; COGs: COG1518 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR019856: IPR002729; KEGG: sat:SYN_02473 putative cytoplasmic protein; PFAM: CRISPR-associated protein Cas1; SPTR: CRISPR-associated endonuclease Cas1, DVULG subtype; TIGRFAM: CRISPR-associated protein Cas1, DVULG subtype; CRISPR-associated protein Cas1; PFAM: CRISPR associated protein Cas1; TIGRFAM: CRISPR-associated endonuclease Cas1, DVULG subtype; CRISPR-associated endonuclease Cas1. (344 aa) |
| | ADY61686.1 | CRISPR-associated protein, Cas2 family; COGs: COG1343 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR021127; KEGG: psa:PST_3751 CRISPR-associated Cas2 family protein; SPTR: CRISPR-associated protein Cas2; TIGRFAM: CRISPR associated protein Cas2; PFAM: CRISPR associated protein Cas2; TIGRFAM: CRISPR-associated endoribonuclease Cas2. (96 aa) |
| | ADY61602.1 | InterPro IPR013766; KEGG: plm:Plim_2038 thioredoxin domain protein; PFAM: Thioredoxin domain; SPTR: Putative uncharacterized protein; PFAM: Thioredoxin. (298 aa) |
| | ADY61563.1 | COGs: COG1186 Protein chain release factor B; InterPro IPR000352; KEGG: plm:Plim_0816 class I peptide chain release factor; PFAM: Class I peptide chain release factor; SPTR: Putative uncharacterized protein; PFAM: RF-1 domain. (168 aa) |
| | ADY61521.1 | Mg chelatase, subunit ChlI; COGs: COG0606 ATPase with chaperone activity; InterPro IPR000523: IPR004482: IPR003593; KEGG: plm:Plim_0159 Mg chelatase, subunit ChlI; PFAM: Magnesium chelatase, ChlI subunit; SMART: ATPase, AAA+ type, core; SPTR: ComM protein; TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, subunit ChlI; TIGRFAM: Mg chelatase-related protein. (509 aa) |
| | ADY61468.1 | KEGG: rba:RB749 serine/threonine protein kinase related protein; SPTR: Probable serine/threonine protein kinase related protein. (535 aa) |
| | ADY61465.1 | Hypothetical protein; COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB12303 serine/threonine protein kinase related protein; SPTR: Probable serine/threonine protein kinase related protein. (448 aa) |
| | ADY61451.1 | CRISPR-associated protein, Csd5d family; InterPro IPR021124: IPR013422: IPR010155; KEGG: avn:Avin_31620 CRISPR-associated protein Cas5d; PFAM: CRISPR-associated protein, Cas5; SPTR: CRISPR-associated protein Cas5d; TIGRFAM: CRISPR-associated protein, Cas5d-type; CRISPR-associated protein Cas5, N-terminal domain; PFAM: CRISPR-associated protein (Cas_Cas5); TIGRFAM: CRISPR-associated protein Cas5, Dvulg subtype; CRISPR-associated protein Cas5, N-terminal domain. (220 aa) |
| | ADY61449.1 | CRISPR-associated protein, Csd2 family; COGs: COG3649 Uncharacterized protein predicted to be involved in DNA repair; InterPro IPR006482: IPR013418; KEGG: ddd:Dda3937_02860 CRISPR-associated protein, TM1801 family; PFAM: CRISPR-associated protein TM1801; SPTR: CRISPR-associated protein, TM1801 family; TIGRFAM: CRISPR-associated protein Csd2; CRISPR-associated protein TM1801; PFAM: Family of unknown function (DUF694); TIGRFAM: CRISPR-associated protein, CT1132 family; CRISPR-associated protein, Csd2 family. (295 aa) |
| | cas1 | CRISPR-associated protein, Cas1 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (344 aa) |
| | cas2 | CRISPR-associated protein, Cas2 family; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa) |
| | ADY61413.1 | COGs: COG3569 Topoisomerase IB; KEGG: mno:Mnod_5352 putative DNA topoisomerase I; SPTR: Putative DNA topoisomerase I; PFAM: Eukaryotic DNA topoisomerase I, catalytic core. (360 aa) |
| | ADY61355.1 | TrwC relaxase; InterPro IPR014862; KEGG: rpc:RPC_0651 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit; PFAM: TrwC relaxase; SPTR: Putative mobilization protein TraA; PFAM: TrwC relaxase; TIGRFAM: conjugative relaxase domain, TrwC/TraI family. (158 aa) |
| | ADY61338.1 | Hypothetical protein; COGs: COG1520 FOG: WD40-like repeat; KEGG: rba:RB13048 hypothetical protein; SPTR: Putative uncharacterized protein. (534 aa) |
| | ADY61310.1 | PDZ/DHR/GLGF domain protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR001478; KEGG: hau:Haur_1707 TPR repeat-containing protein; PFAM: PDZ/DHR/GLGF; SMART: PDZ/DHR/GLGF; SPTR: Tetratricopeptide TPR_3; PFAM: PDZ domain (Also known as DHR or GLGF). (576 aa) |
| | ADY61307.1 | PDZ/DHR/GLGF domain protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR019734: IPR001478; KEGG: npu:Npun_AF084 TPR repeat-containing protein; SMART: PDZ/DHR/GLGF; Tetratricopeptide repeat; SPTR: Tetratricopeptide TPR_2 repeat protein. (1710 aa) |
| | ADY61298.1 | PDZ/DHR/GLGF domain protein; COGs: COG4995 conserved hypothetical protein; InterPro IPR001440: IPR001478: IPR019734; KEGG: gvi:glr1061 kinesin light chain; PFAM: PDZ/DHR/GLGF; Tetratricopeptide TPR-1; SMART: PDZ/DHR/GLGF; Tetratricopeptide repeat; SPTR: Kinesin light chain-like protein; PFAM: PDZ domain (Also known as DHR or GLGF). (1464 aa) |
| | ADY61196.1 | KEGG: plm:Plim_1833 hypothetical protein; SPTR: Putative uncharacterized protein. (636 aa) |
| | ADY61172.1 | KEGG: rba:RB8085 PQQ repeat-containing protein; SPTR: Putative uncharacterized protein. (465 aa) |
| | ADY61068.1 | Primary replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (469 aa) |
| | topA | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] (880 aa) |
| | ADY61033.1 | Organic solvent tolerance protein; InterPro IPR007543; KEGG: plm:Plim_0103 hypothetical protein; PFAM: Organic solvent tolerance protein, C-terminal; SPTR: Putative uncharacterized protein. (1062 aa) |
| | ADY60993.1 | Glycosyl transferase, family 4, conserved region-containing protein; COGs: COG0472 UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N- acetylglucosamine-1-phosphate transferase; InterPro IPR018481; KEGG: plm:Plim_2437 glycosyl transferase family 4; PFAM: Glycosyl transferase, family 4, conserved region; SPTR: Putative undecaprenyl-phosphate alpha-N-acetylglucosaminyltransferase; PFAM: Glycosyl transferase family 4. (368 aa) |
| | ADY60988.1 | Adenylyl cyclase CyaB; COGs: COG1437 Adenylate cyclase class 2 (thermophilic); InterPro IPR008172: IPR008173; KEGG: psl:Psta_0158 adenylyl cyclase CyaB; PFAM: Adenylate cyclase; SPTR: Adenylyl cyclase CyaB; TIGRFAM: Adenylyl cyclase CyaB; PFAM: CYTH domain; TIGRFAM: adenylyl cyclase CyaB, putative. (188 aa) |
| | murE | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase; Catalyzes the addition of an amino acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. (504 aa) |
| | murF | UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diamin opimelate/D-alanyl-D-alanylligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (473 aa) |
| | ADY60940.1 | Iron-regulated ABC transporter membrane component SufB; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR010231; KEGG: plm:Plim_2390 FeS assembly protein SufB; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: Putative uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufB; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufB. (471 aa) |
| | ADY60939.1 | Iron-regulated ABC transporter permease protein SufD; COGs: COG0719 ABC-type transport system involved in Fe-S cluster assembly permease component; InterPro IPR000825: IPR011542; KEGG: plm:Plim_2391 FeS assembly protein SufD; PFAM: SUF system FeS cluster assembly, SufBD; SPTR: Putative uncharacterized protein; TIGRFAM: SUF system FeS cluster assembly, SufD; PFAM: Uncharacterized protein family (UPF0051); TIGRFAM: FeS assembly protein SufD, group 1. (442 aa) |
| | ADY60938.1 | Protein of unknown function DUF59; COGs: COG2151 metal-sulfur cluster biosynthetic protein; InterPro IPR017941: IPR002744; KEGG: plm:Plim_2392 protein of unknown function DUF59; PFAM: Protein of unknown function DUF59; Rieske [2Fe-2S] iron-sulphur domain; SPTR: Putative uncharacterized protein; PFAM: Domain of unknown function DUF59; Rieske [2Fe-2S] domain. (250 aa) |
| | ADY60906.1 | Bifunctional DNA primase/polymerase; InterPro IPR015330: IPR014819; KEGG: lsa:LSA0594 hypothetical protein; PFAM: DNA primase/polymerase, bifunctional, N-terminal; Primase, C-terminal 2; SPTR: Putative uncharacterized protein; PFAM: Primase C terminal 2 (PriCT-2); Bifunctional DNA primase/polymerase, N-terminal. (660 aa) |
| | ADY60742.1 | InterPro IPR013498; KEGG: psl:Psta_0839 DNA topoisomerase type IA zn finger domain protein; PFAM: DNA topoisomerase, type IA, zn finger; SPTR: Putative uncharacterized protein; PFAM: Topoisomerase DNA binding C4 zinc finger; Protein of unknown function (DUF2726). (219 aa) |
| | ADY60624.1 | LVIVD repeat-containing protein; COGs: COG5276 conserved hypothetical protein; InterPro IPR013211; KEGG: kol:Kole_0192 LVIVD repeat protein; PFAM: LVIVD; SPTR: Putative uncharacterized protein; PFAM: LVIVD repeat. (707 aa) |
| | ADY60411.1 | KEGG: plm:Plim_3010 hypothetical protein; SPTR: Putative uncharacterized protein. (512 aa) |
| | ADY60389.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391: IPR002372; KEGG: psl:Psta_1668 pyrrolo-quinoline quinone; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Probable serine/threonine protein kinase afsK. (436 aa) |
| | murG | Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (408 aa) |
| | prfB | Bacterial peptide chain release factor 2 (bRF-2); Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. (373 aa) |
| | ADY60349.1 | KEGG: psl:Psta_0797 FOG: WD40 repeat-like protein; SPTR: Probable polyvinylalcohol dehydrogenase. (517 aa) |
| | ADY60286.1 | Potassium/proton antiporter, CPA1 family; COGs: COG3263 NhaP-type Na+/H+ and K+/H+ antiporter with a unique C-terminal domain; InterPro IPR006153: IPR006037; KEGG: rba:RB11069 potassium/proton antiporter; PFAM: Cation/H+ exchanger; Regulator of K+ conductance, C-terminal; SPTR: Putative Na(+)/H(+) exchanger ycgO; PFAM: Sodium/hydrogen exchanger family; TrkA-C domain; TC 2.A.36. (585 aa) |
| | ADY60215.1 | Exodeoxyribonuclease V; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: plm:Plim_1377 exodeoxyribonuclease V; PFAM: DNA helicase, UvrD/REP type; PRIAM: Exodeoxyribonuclease V; SPTR: UvrD/REP helicase; PFAM: UvrD/REP helicase; TIGRFAM: recombination helicase AddA, Firmicutes type; Belongs to the helicase family. UvrD subfamily. (1168 aa) |
| | ADY60214.1 | Hypothetical protein; COGs: COG3857 ATP-dependent nuclease subunit B; KEGG: plm:Plim_2361 ATP-dependent nuclease subunit B-like protein; SPTR: ATP-dependent deoxyribonuclease subunit B. (1129 aa) |
| | murB | UDP-N-acetylmuramate dehydrogenase; Cell wall formation. (294 aa) |
| | ADY60186.1 | UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family. (495 aa) |
| | ADY60176.1 | InterPro IPR019734: IPR001440; KEGG: plm:Plim_2555 tetratricopeptide TPR_2 repeat protein; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat protein. (855 aa) |
| | ADY60175.1 | Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins. (151 aa) |
| | rplT | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (118 aa) |
| | ADY60170.1 | Pyrrolo-quinoline quinone beta-propeller repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR018391; KEGG: psl:Psta_2150 pyrrolo-quinoline quinone; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Putative uncharacterized protein. (407 aa) |
| | ddl | D-alanine--D-alanine ligase; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (312 aa) |
| | ADY60146.1 | Twitching motility protein; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321: IPR001482: IPR013256; KEGG: plm:Plim_0409 twitching motility protein; PFAM: Type II secretion system protein E; Chromatin SPT2; SPTR: Twitching mobility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT. (371 aa) |
| | ADY58469.1 | Pyrrolo-quinoline quinone repeat-containing protein; COGs: COG1520 FOG: WD40-like repeat; InterPro IPR002372: IPR018391; KEGG: rba:RB638 serine/threonine protein kinase; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; SPTR: Similar to serine/threonine protein kinase; PFAM: PQQ enzyme repeat. (414 aa) |
| | ADY58483.1 | COGs: COG2166 SufE protein probably involved in Fe-S center assembly; InterPro IPR003808; KEGG: rmr:Rmar_2026 Fe-S metabolism associated SufE; PFAM: Fe-S metabolism associated SufE; SPTR: Cysteine desulfurase SufE subunit; PFAM: Fe-S metabolism associated domain. (151 aa) |
| | ADY58514.1 | KEGG: plm:Plim_0189 hypothetical protein; SPTR: Putative uncharacterized protein. (565 aa) |
| | ADY58577.1 | AAA ATPase central domain protein; COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR003593: IPR003959: IPR008823; KEGG: dth:DICTH_1502 Holliday junction DNA helicase RuvB; PFAM: ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, C-terminal; SMART: ATPase, AAA+ type, core; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus; TIGRFAM: Holliday junction DNA helicase, RuvB subunit. (313 aa) |
| | ADY58691.1 | DEAD/DEAH box helicase domain protein; COGs: COG1200 RecG-like helicase; InterPro IPR014001: IPR001650: IPR004365: IPR011545; KEGG: plm:Plim_0908 DEAD/DEAH box helicase domain protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: ATP-dependent DNA helicase RecG; PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; TIGRFAM: ATP-dependent DNA helicase RecG. (701 aa) |
| | csrA-4 | Carbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (70 aa) |
| | ADY58755.1 | Helicase domain protein; COGs: COG0553 Superfamily II DNA/RNA helicase SNF2 family; InterPro IPR014001: IPR001650: IPR000330; KEGG: ace:Acel_0816 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; SPTR: Helicase domain protein; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain. (939 aa) |
| | ADY58757.1 | Exodeoxyribonuclease V; COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: nha:Nham_3707 ATPase; PRIAM: Exodeoxyribonuclease V; SPTR: ATPase; PFAM: Viral (Superfamily 1) RNA helicase. (1186 aa) |
| | ADY58768.1 | Holliday junction DNA helicase RuvB domain protein; COGs: COG2255 Holliday junction resolvasome helicase subunit; InterPro IPR011704: IPR008823; KEGG: kol:Kole_0208 Holliday junction DNA helicase RuvB; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-5; SPTR: Holliday junction ATP-dependent DNA helicase ruvB; PFAM: Holliday junction DNA helicase ruvB C-terminus; Holliday junction DNA helicase ruvB N-terminus. (318 aa) |
| | ADY58840.1 | Hypothetical protein; InterPro IPR018391; KEGG: psl:Psta_4175 pyrrolo-quinoline quinone; SPTR: Putative uncharacterized protein. (1524 aa) |
