STRINGSTRING
ADJ61612.1 ADJ61612.1 ADJ61679.1 ADJ61679.1 resB resB ccmC ccmC ADJ61838.1 ADJ61838.1 tlpA tlpA ADJ61962.1 ADJ61962.1 ADJ62137.1 ADJ62137.1 ADJ62185.1 ADJ62185.1 ubiH ubiH ADJ62621.1 ADJ62621.1 slpA slpA ADJ62738.1 ADJ62738.1 cccA cccA ADJ62904.1 ADJ62904.1 ADJ63027.1 ADJ63027.1 ADJ63129.1 ADJ63129.1 ADJ63130.1 ADJ63130.1 ADJ63131.1 ADJ63131.1 ndh ndh nuoA nuoA nuoB nuoB nuoC nuoC nuoD nuoD nuoE nuoE nuoF nuoF nuoG nuoG nuoH nuoH nuoI nuoI nuoJ nuoJ nuoK nuoK nuoL nuoL nuoM nuoM nuoN nuoN ADJ63293.1 ADJ63293.1 ADJ63591.1 ADJ63591.1 ADJ63702.1 ADJ63702.1 rnfH rnfH ADJ63806.1 ADJ63806.1 ADJ63807.1 ADJ63807.1 ADJ63808.1 ADJ63808.1 coxB coxB coxA coxA coxB-2 coxB-2 ADJ63817.1 ADJ63817.1 ADJ63818.1 ADJ63818.1 ADJ63819.1 ADJ63819.1 ADJ63879.1 ADJ63879.1 fnr fnr shb1 shb1 cyoD cyoD cyoC cyoC cyoB cyoB cyoA cyoA ADJ63964.1 ADJ63964.1 ADJ64275.1 ADJ64275.1 recJ recJ ADJ64543.1 ADJ64543.1 ADJ64544.1 ADJ64544.1 cydA cydA cydB cydB ADJ64547.1 ADJ64547.1 mrp mrp ADJ64680.1 ADJ64680.1 ADJ64681.1 ADJ64681.1 fixG fixG fixP fixP fixO fixO fixN fixN fixS fixS fixI fixI ADJ64688.1 ADJ64688.1 ADJ64690.1 ADJ64690.1 ADJ64731.1 ADJ64731.1 slyD slyD cynT cynT ADJ64940.1 ADJ64940.1 ADJ64941.1 ADJ64941.1 ubiD ubiD ubiG ubiG ubiA ubiA ubiF ubiF ADJ65372.1 ADJ65372.1 ubiB ubiB ADJ65374.1 ADJ65374.1 ubiE ubiE ADJ65377.1 ADJ65377.1 hit hit ADJ65379.1 ADJ65379.1 ubiX ubiX sspB sspB sspA sspA petC petC petB petB petA petA ADJ65609.1 ADJ65609.1 ADJ65610.1 ADJ65610.1 kdtB kdtB ADJ65612.1 ADJ65612.1 ADJ65613.1 ADJ65613.1 ADJ65614.1 ADJ65614.1 ADJ65615.1 ADJ65615.1 ADJ65621.1 ADJ65621.1 ctaB ctaB ctaA ctaA ADJ65624.1 ADJ65624.1 ADJ65625.1 ADJ65625.1 ADJ65626.1 ADJ65626.1 coxC coxC coxG coxG coxA-2 coxA-2 coxB-3 coxB-3 bioC bioC ADJ65640.1 ADJ65640.1 ADJ65660.1 ADJ65660.1 ADJ65854.1 ADJ65854.1 ADJ65865.1 ADJ65865.1 ADJ66088.1 ADJ66088.1 ADJ66139.1 ADJ66139.1
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
ADJ61612.1Conserved hypothetical protein; S - Function unknown. (81 aa)
ADJ61679.1Cytochrome c553 protein. (220 aa)
resBCytochrome C-type biogenesis transmembrane protein. (688 aa)
ccmCABC-type transport system, permease component protein; Involved in cytochrome c biogenesis. (384 aa)
ADJ61838.1Sulfate permease family protein. (501 aa)
tlpAThioredoxin-related transmembrane protein. (173 aa)
ADJ61962.1Nucleoside-diphosphate-sugar epimerase protein. (288 aa)
ADJ62137.1Deoxynucleoside kinase protein. (213 aa)
ADJ62185.1Conserved hypothetical protein; S - Function unknown. (66 aa)
ubiH2-octaprenyl-6-methoxyphenol hydroxylase oxidoreductase protein. (382 aa)
ADJ62621.1Cytochrome c551/c552 transmembrane protein. (104 aa)
slpAFkbP-type peptidyl-prolyl cis-trans isomerase 2 protein. (158 aa)
ADJ62738.1Short-chain alcohol dehydrogenase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (250 aa)
cccACytochrome c protein. (431 aa)
ADJ62904.1Cytochrome c553 protein. (252 aa)
ADJ63027.1Conserved hypothetical protein; S - Function unknown. (116 aa)
ADJ63129.1Periplasmic cytochrome c553 protein. (106 aa)
ADJ63130.1Periplasmic cytochrome c553 protein. (117 aa)
ADJ63131.1Conserved hypothetical protein; S - Function unknown. (143 aa)
ndhNADH dehydrogenase, FAD-containing subunit, protein; cytochrome c reductase protein. (430 aa)
nuoATransmembrane NADH dehydrogenase I (Chain A) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 3 family. (119 aa)
nuoBNADH dehydrogenase I (Chain B) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (158 aa)
nuoCNADH dehydrogenase I (Chain C) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (198 aa)
nuoDNADH dehydrogenase I (Chain D) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa)
nuoENADH dehydrogenase I (Chain E) oxidoreductase protein. (159 aa)
nuoFNADH dehydrogenase I (chain F) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (431 aa)
nuoGNADH dehydrogenase I (Chain G) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (772 aa)
nuoHTransmembrane NADH dehydrogenase I (chain H) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone. (356 aa)
nuoINADH dehydrogenase I (Chain I) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (162 aa)
nuoJTransmembrane NADH dehydrogenase I (Chain J) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (219 aa)
nuoKTransmembrane NADH dehydrogenase I (Chain K) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 4L family. (102 aa)
nuoLTransmembrane NADH dehydrogenase I (Chain L) oxidoreductase protein. (696 aa)
nuoMTransmembrane NADH dehydrogenase I (chain M) oxidoreductase protein. (496 aa)
nuoNNADH-ubiquinone (chain N) oxidoreductase protein; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I subunit 2 family. (502 aa)
ADJ63293.1Transmembrane protein. (104 aa)
ADJ63591.1Conserved hypothetical protein; S - Function unknown. (126 aa)
ADJ63702.1Oligoketide cyclase/lipid transport protein. (143 aa)
rnfHConserved hypothetical protein; S - Function unknown; Belongs to the UPF0125 (RnfH) family. (101 aa)
ADJ63806.1Cytochrome c553 (cytochrome c4) protein. (273 aa)
ADJ63807.1Cytochrome c1 protein. (124 aa)
ADJ63808.1Conserved hypothetical protein; S - Function unknown. (297 aa)
coxBCytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein. (200 aa)
coxACytochrome c oxidase polypeptide I (cytochrome aa3 subunit 1) transmembrane protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (633 aa)
coxB-2Cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein. (344 aa)
ADJ63817.1LysR family transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (306 aa)
ADJ63818.1NADH:ubiquinone oxidoreductase subunit 5 (chain L)/Multisubunit Na+/H+ antiporter, MnhA subunit protein. (536 aa)
ADJ63819.1Conserved hypothetical protein; S - Function unknown; Belongs to the UPF0753 family. (838 aa)
ADJ63879.1Hypothetical protein; S - Function unknown. (64 aa)
fnrCrp/Fnr family transcription regulator protein. (272 aa)
shb1Surfeit 1 protein. (285 aa)
cyoDUbiquinol oxidase subunit IV protein. (158 aa)
cyoCCytochrome o ubiquinol oxidase subunit III protein. (208 aa)
cyoBCytochrome o ubiquinol oxidase subunit I protein; Belongs to the heme-copper respiratory oxidase family. (667 aa)
cyoACytochrome o ubiquinol oxidase subunit II protein. (310 aa)
ADJ63964.1Permease of the major facilitator superfamily protein. (447 aa)
ADJ64275.1Signal peptide protein. (343 aa)
recJsingle-stranded-DNA-specific exonuclease protein. (564 aa)
ADJ64543.1Transcription regulator protein; Belongs to the GbsR family. (189 aa)
ADJ64544.1Conserved hypothetical protein; S - Function unknown. (84 aa)
cydACytochrome bd-type quinol oxidase, subunit 1, protein. (541 aa)
cydBCytochrome bd-type quinol oxidase, subunit 2, protein. (379 aa)
ADJ64547.1Conserved hypothetical protein; S - Function unknown. (178 aa)
mrpATPase involved in chromosome partitioning protein; Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP; Belongs to the Mrp/NBP35 ATP-binding proteins family. (362 aa)
ADJ64680.1Transmembrane protein. (83 aa)
ADJ64681.1Conserved hypothetical protein; S - Function unknown. (190 aa)
fixGIron-sulfur 4Fe-4S ferredoxin transmembrane protein. (485 aa)
fixPCbb3-type cytochrome c oxidase, subunit III transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (310 aa)
fixOCbb3-type cytochrome c oxidase, subunit II transmembrane protein. (204 aa)
fixNCbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family. (475 aa)
fixSNitrogen fixation protein. (57 aa)
fixICation transport P-type ATPase protein. (839 aa)
ADJ64688.1Conserved hypothetical protein; S - Function unknown. (284 aa)
ADJ64690.1Hypothetical protein; S - Function unknown. (91 aa)
ADJ64731.1Isoleucine patch superfamily carbonic anhydrase/acetyltransferase protein. (186 aa)
slyDFKBP-type peptidyl-prolyl cis-trans isomerase (Rotamase) protein. (180 aa)
cynTCarbonic anhydrase protein; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (212 aa)
ADJ64940.1Fe-S cluster protector protein; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (90 aa)
ADJ64941.1Zn-dependent peptidase protein; Belongs to the peptidase M16 family. (929 aa)
ubiD3-polyprenyl-4-hydroxybenzoate decarboxylase protein; Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol, an intermediate step in ubiquinone biosynthesis. (494 aa)
ubiG3-demethylubiquinone-9 3-methyl transferase protein; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the methyltransferase superfamily. UbiG/COQ3 family. (241 aa)
ubiA4-hydroxybenzoate octaprenyltransferase transmembrane protein; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate. (284 aa)
ubiF2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase (ubiquinone biosynthesis) protein; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis. (208 aa)
ADJ65372.1Permease of the major facilitator superfamily protein. (498 aa)
ubiBUbiquinone biosynthesis transmembrane protein; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. (524 aa)
ADJ65374.1Conserved hypothetical protein; S - Function unknown. (202 aa)
ubiEUbiquinone/menaquinone biosynthesis; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). (244 aa)
ADJ65377.1Conserved hypothetical protein; S - Function unknown. (140 aa)
hitDiadenosine tetraphosphate (Ap4A) hydrolase protein. (150 aa)
ADJ65379.1Oxidoreductase protein. (1333 aa)
ubiX3-octaprenyl-4-hydroxybenzoate carboxy-lyase protein; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family. (200 aa)
sspBStringent starvation B protein. (165 aa)
sspAStringent starvation transcription regulator A protein. (203 aa)
petCCytochrome c1 precursor transmembrane protein. (254 aa)
petBCytochrome b subunit transmembrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (468 aa)
petATransmembrane ubiquinol-cytochrome C reductase (Iron-sulfur subunit) oxidoreductase protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (202 aa)
ADJ65609.1Permease of the drug/metabolite transporter (DMT) superfamily protein. (295 aa)
ADJ65610.1[4Fe-4S]-type ferredoxin protein. (86 aa)
kdtBPhosphopantetheine adenylyltransferase (pantetheine-Phosphate adenylyltransferase) protein; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. (160 aa)
ADJ65612.1N6-adenine-specific methylase protein. (224 aa)
ADJ65613.1Zinc protease-like signal peptide protein. (438 aa)
ADJ65614.1Chromosome partitioning-related ATPase of external origin protein. (219 aa)
ADJ65615.1Zinc protease protein. (459 aa)
ADJ65621.1Lipoprotein. (196 aa)
ctaBProtoheme IX farnesyltransferase (heme O synthase) transmembrane protein; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group. (297 aa)
ctaAHeme O oxygenase (cytochrome aa3-controlling) transmembrane protein. (378 aa)
ADJ65624.1Transmembrane protein. (188 aa)
ADJ65625.1Transmembrane cytochrome oxidase complex biogenesis factor transmembrane protein. (240 aa)
ADJ65626.1Transmembrane protein. (66 aa)
coxCCytochrome c oxidase subunit III transmembrane protein. (286 aa)
coxGCytochrome C oxidase assembly transmembrane protein. (190 aa)
coxA-2Cytochrome c oxidase polypeptide I (cytochrome aa3 subunit 1) transmembrane protein; Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1-3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B. (539 aa)
coxB-3Cytochrome c oxidase polypeptide II precursor (cytochrome aa3 subunit 2) transmembrane protein; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). (386 aa)
bioCSAM-dependent methyltransferase protein; Converts the free carboxyl group of a malonyl-thioester to its methyl ester by transfer of a methyl group from S-adenosyl-L- methionine (SAM). It allows to synthesize pimeloyl-ACP via the fatty acid synthetic pathway. (329 aa)
ADJ65640.1Conserved hypothetical protein; S - Function unknown. (174 aa)
ADJ65660.12-polyprenyl-6-methoxyphenol hydroxylase protein. (410 aa)
ADJ65854.1Cytochrome c family protein. (189 aa)
ADJ65865.1Conserved hypothetical protein; S - Function unknown. (394 aa)
ADJ66088.1Cytochrome c2 protein. (125 aa)
ADJ66139.1Thioredoxin protein. (175 aa)
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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