STRINGSTRING
tsr-5 tsr-5 ampG ampG murE murE murF murF murD murD murG murG murC murC ddlB ddlB ftsQ ftsQ ftsA ftsA ftsZ ftsZ acrB acrB acrA acrA ADJ62057.1 ADJ62057.1 ADJ62142.1 ADJ62142.1 cheW cheW cheR cheR cheB cheB ADJ62146.1 ADJ62146.1 tsr tsr tsr-2 tsr-2 ADJ62637.1 ADJ62637.1 ompC ompC ompC-2 ompC-2 ADJ62874.1 ADJ62874.1 cheW-2 cheW-2 cheB-2 cheB-2 cheR-2 cheR-2 cheA cheA cheR-3 cheR-3 cheB-3 cheB-3 cheZ cheZ fliA fliA flgA flgA flgE flgE fliD fliD ompC-3 ompC-3 tsr-3 tsr-3 cheA-2 cheA-2 ADJ64063.1 ADJ64063.1 tsr-4 tsr-4 cheM cheM cheW-3 cheW-3 cheA-3 cheA-3 flhC flhC flhD flhD ADJ64503.1 ADJ64503.1 ADJ64504.1 ADJ64504.1 cheB-4 cheB-4 cheA-4 cheA-4 cheW-4 cheW-4 cheR-4 cheR-4 ADJ64509.1 ADJ64509.1 ADJ64510.1 ADJ64510.1 cheZ-2 cheZ-2 cheA-5 cheA-5 cheB-5 cheB-5 cheR-5 cheR-5 tsr-6 tsr-6 tsr-7 tsr-7 fliD-2 fliD-2 flgE-2 flgE-2 ompC-4 ompC-4 tsr-8 tsr-8 ADJ65600.1 ADJ65600.1 rfbG rfbG glmU glmU tsr-9 tsr-9 tsr-10 tsr-10
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
tsr-5Methyl-accepting chemotaxis transducer transmembrane protein. (536 aa)
ampGMuropeptide permease of the major facilitator superfamily protein. (388 aa)
murEUDP-N-acetylmuramoylalanyl-D-glutamate-2,6- diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily. (508 aa)
murFUDP-N-acetylmuramoyl-tripeptide---D-alanyl-D- alanine ligase protein; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily. (486 aa)
murDUDP-N-acetylmuramoylalanine-D-glutamate ligase protein; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family. (710 aa)
murGUndecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily. (360 aa)
murCUDP-N-acetylmuramate-L-alanine ligase protein; Cell wall formation; Belongs to the MurCDEF family. (475 aa)
ddlBD-alanine-D-alanine ligase B protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family. (334 aa)
ftsQCell division septal protein; Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly. (256 aa)
ftsAActin-like ATPase involved in cell division protein; Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring. Belongs to the FtsA/MreB family. (410 aa)
ftsZCell division GTPase (FtsZ) transmembrane protein; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity. (395 aa)
acrBAcriflavin resistance transmembrane protein. (1048 aa)
acrAAcriflavin resistance lipoprotein A protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (402 aa)
ADJ62057.1Methyl-accepting chemotaxis transducer transmembrane protein. (547 aa)
ADJ62142.1Methyl-accepting chemotaxis transducer transmembrane protein. (595 aa)
cheWPositive regulator of CheA protein activity protein. (194 aa)
cheRChemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (277 aa)
cheBChemotaxis-specific methylesterase protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (381 aa)
ADJ62146.1Response regulator (FOG: EAL domain) protein. (420 aa)
tsrMethyl-accepting chemotaxis transducer transmembrane protein I. (547 aa)
tsr-2Methyl-accepting chemotaxis transducer transmembrane protein. (517 aa)
ADJ62637.1Acyl dehydratase protein. (170 aa)
ompCOuter membrane porin protein. (369 aa)
ompC-2Outer membrane protein (porin) signal peptide protein. (352 aa)
ADJ62874.1Cation/multidrug efflux pump protein. (1049 aa)
cheW-2Chemotaxis signal transduction protein. (516 aa)
cheB-2Protein-glutamate methylesterase protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (353 aa)
cheR-2Chemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (280 aa)
cheAChemotaxis histidine kinase protein. (837 aa)
cheR-3Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (290 aa)
cheB-3Chemotaxis-specific methylesterase protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (359 aa)
cheZChemotaxis phosphatase, CheZ protein; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (216 aa)
fliARNA polymerase sigma factor for flagellar operon (sigma-F factor) protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (244 aa)
flgAFlagellar basal body P-ring formation protein. (254 aa)
flgEFlagellar basal-body rod FlgE protein. (432 aa)
fliDFlagellar hook-associated 2 protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (690 aa)
ompC-3Outer membrane porin protein. (374 aa)
tsr-3Methyl-accepting chemotaxis transducer transmembrane protein. (581 aa)
cheA-2Chemotaxis histidine kinase protein. (808 aa)
ADJ64063.1ABC-type amino acid transport system, permease component protein; Belongs to the binding-protein-dependent transport system permease family. (358 aa)
tsr-4Methyl-accepting chemotaxis II protein. (542 aa)
cheMMethyl-accepting chemotaxis I protein. (517 aa)
cheW-3CheW chemotaxis protein, positive regulator of CheA protein activity. (168 aa)
cheA-3Signal-transducing histidine kinase CheA protein. (697 aa)
flhCFlagellar transcription activator regulator protein; Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhC family. (200 aa)
flhDFlagellar transcription activator protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (105 aa)
ADJ64503.1Acyl dehydratase (NodN) protein. (151 aa)
ADJ64504.1Response regulator protein. (341 aa)
cheB-4Protein-glutamate methylesterase protein; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family. (342 aa)
cheA-4Two component hybrid sensor histidine kinase/response regulator protein. (775 aa)
cheW-4Chemotaxis signal transduction protein. (211 aa)
cheR-4Methyltransferase of chemotaxis proteins protein. (433 aa)
ADJ64509.1Chemotaxis signal transduction protein. (158 aa)
ADJ64510.1Methyl-accepting chemotaxis protein. (541 aa)
cheZ-2Chemotaxis phosphatase protein; Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P). (246 aa)
cheA-5Chemotaxis CheA protein. (638 aa)
cheB-5Protein-glutamate methylesterase protein. (211 aa)
cheR-5Protein-glutamate methyltransferase chemotaxis response regulator protein. (283 aa)
tsr-6Methyl-accepting chemotaxis transducer transmembrane protein. (542 aa)
tsr-7Methyl-accepting chemotaxis protein I, serine sensor receptor transmembrane protein. (524 aa)
fliD-2Flagellar capping protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end. (680 aa)
flgE-2Flagellar hook protein. (420 aa)
ompC-4Porin transmembrane protein. (365 aa)
tsr-8Methyl-accepting chemotaxis protein I, serine sensor receptor protein. (544 aa)
ADJ65600.1NAD-dependent aldehyde dehydrogenase protein. (561 aa)
rfbGCDP-glucose-4,6-dehydratase protein. (357 aa)
glmUUDP-N-acetylglucosamine pyrophosphorylase protein; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain. (452 aa)
tsr-9Methyl-accepting chemotaxis transducer transmembrane protein. (597 aa)
tsr-10Methyl-accepting chemotaxis protein I, serine sensor receptor protein. (554 aa)
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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