STRINGSTRING
cheW cheW cheW-2 cheW-2 cheA cheA recO recO radA radA cheA-2 cheA-2 cheW-3 cheW-3 cheA-3 cheA-3 cheA-4 cheA-4 cheW-4 cheW-4 cheA-5 cheA-5 umuC umuC recR recR dinP dinP
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
cheWPositive regulator of CheA protein activity protein. (194 aa)
cheW-2Chemotaxis signal transduction protein. (516 aa)
cheAChemotaxis histidine kinase protein. (837 aa)
recODNA repair protein; Involved in DNA repair and RecF pathway recombination. (286 aa)
radAATP-dependent serine protease protein; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (461 aa)
cheA-2Chemotaxis histidine kinase protein. (808 aa)
cheW-3CheW chemotaxis protein, positive regulator of CheA protein activity. (168 aa)
cheA-3Signal-transducing histidine kinase CheA protein. (697 aa)
cheA-4Two component hybrid sensor histidine kinase/response regulator protein. (775 aa)
cheW-4Chemotaxis signal transduction protein. (211 aa)
cheA-5Chemotaxis CheA protein. (638 aa)
umuCSOS mutagenesis and repair protein. (162 aa)
recRRocombinational DNA repair protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa)
dinPnucleotidyltransferase/DNA polymerase involved in DNA repair protein; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (384 aa)
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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