STRINGSTRING
fixP fixP fixN fixN ADJ65129.1 ADJ65129.1 ADJ65764.1 ADJ65764.1 urtA urtA ADJ61613.1 ADJ61613.1 glnK glnK amtB amtB cheW cheW bfr-2 bfr-2 ADJ62962.1 ADJ62962.1 fdxA fdxA cheW-2 cheW-2 cheA cheA ycgR ycgR fliC fliC cheA-2 cheA-2 ADJ64219.1 ADJ64219.1 nifD nifD nifH nifH nifA nifA cheW-3 cheW-3 cheA-3 cheA-3 flhD flhD cheA-4 cheA-4 ispF ispF cheW-4 cheW-4 cheA-5 cheA-5
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fixPCbb3-type cytochrome c oxidase, subunit III transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex. (310 aa)
fixNCbb3-type cytochrome c oxidase, subunit I transmembrane protein; Belongs to the heme-copper respiratory oxidase family. (475 aa)
ADJ65129.1Type IV pilus assembly protein. (152 aa)
ADJ65764.1Outer membrane (porin) protein. (387 aa)
urtAABC-type urea transport system, periplasmic component protein. (417 aa)
ADJ61613.1Membrane protein. (262 aa)
glnKNitrogen regulatory PII-like protein; Belongs to the P(II) protein family. (112 aa)
amtBAmmonium transporter transmembrane protein. (510 aa)
cheWPositive regulator of CheA protein activity protein. (194 aa)
bfr-2Bacterioferritin (cytochrome b1) protein. (186 aa)
ADJ62962.1Aspartyl/asparaginyl beta-hydroxylase transmembrane protein. (299 aa)
fdxAFerredoxin protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)
cheW-2Chemotaxis signal transduction protein. (516 aa)
cheAChemotaxis histidine kinase protein. (837 aa)
ycgRYcgR and PilZ families (type IV pilus assembly PilZ) protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility. (251 aa)
fliCFlagellin protein; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella. (362 aa)
cheA-2Chemotaxis histidine kinase protein. (808 aa)
ADJ64219.1Methyl-accepting chemotaxis transmembrane protein. (548 aa)
nifDNitrogenase molybdenum-iron protein alpha chain protein. (484 aa)
nifHDinitrogenase reductase protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family. (292 aa)
nifANif-specific regulatory protein. (542 aa)
cheW-3CheW chemotaxis protein, positive regulator of CheA protein activity. (168 aa)
cheA-3Signal-transducing histidine kinase CheA protein. (697 aa)
flhDFlagellar transcription activator protein; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non- flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family. (105 aa)
cheA-4Two component hybrid sensor histidine kinase/response regulator protein. (775 aa)
ispF2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP). (167 aa)
cheW-4Chemotaxis signal transduction protein. (211 aa)
cheA-5Chemotaxis CheA protein. (638 aa)
Your Current Organism:
Herbaspirillum seropedicae
NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1
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