40 items (Herbaspirillum seropedicae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Predicted Interactions

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Your Input:
	exbB-3	Biopolymer transport transmembrane protein. (243 aa)
	exbD	Biopolymer transport ExbD/TolR protein. (135 aa)
	ampD	anhydro-N-acetylmuramyl-tripeptide amidase protein. (207 aa)
	pcm	protein-L-isoaspartate O-methyltransferase protein. (221 aa)
	exbD-2	Biopolymer transport ExbD/TolR protein. (148 aa)
	exbB	Biopolymer transport transmembrane protein; MotA/TolQ/ExbB proton channel family. (231 aa)
	cheW	Positive regulator of CheA protein activity protein. (194 aa)
	cheR	Chemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (277 aa)
	exbD-3	Biopolymer transport ExbD/TolR protein. (138 aa)
	exbB-2	Biopolymer transport transmembrane protein. (243 aa)
	exbD-4	Biopolymer transport ExbD/TolR protein. (144 aa)
	murI	Glutamate racemase protein; Provides the (R)-glutamate required for cell wall biosynthesis. (297 aa)
	purU	Formyltetrahydrofolate deformylase protein; Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4). (289 aa)
	cheW-2	Chemotaxis signal transduction protein. (516 aa)
	cheR-2	Chemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (280 aa)
	cheA	Chemotaxis histidine kinase protein. (837 aa)
	opuBC	ABC-type proline/glycine betaine transport system, periplasmic binding component protein; Osmoprotectant. (306 aa)
	cheR-3	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP. (290 aa)
	fliA	RNA polymerase sigma factor for flagellar operon (sigma-F factor) protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily. (244 aa)
	fliQ	Flagellar biosynthetic FliQ protein; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family. (89 aa)
	fliG	Flagellar motor switch FliG protein. (331 aa)
	polB	DNA polymerase II protein. (790 aa)
	cheA-2	Chemotaxis histidine kinase protein. (808 aa)
	exbD-5	Biopolymer transport ExbD/TolR protein. (132 aa)
	adhC2	Zinc-type alcohol dehydrogenase transmembrane protein. (374 aa)
	exbD-6	Biopolymer transport ExbD/TolR protein. (139 aa)
	pcm-2	protein-L-isoaspartate carboxylmethyltransferase protein; Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and/or degradation of damaged proteins. (321 aa)
	cheW-3	CheW chemotaxis protein, positive regulator of CheA protein activity. (168 aa)
	cheA-3	Signal-transducing histidine kinase CheA protein. (697 aa)
	motB	Flagellar motor component protein. (312 aa)
	cheA-4	Two component hybrid sensor histidine kinase/response regulator protein. (775 aa)
	cheW-4	Chemotaxis signal transduction protein. (211 aa)
	cheR-4	Methyltransferase of chemotaxis proteins protein. (433 aa)
	cheA-5	Chemotaxis CheA protein. (638 aa)
	cheR-5	Protein-glutamate methyltransferase chemotaxis response regulator protein. (283 aa)
	purD	Phosphoribosylamine-glycine ligase protein; Belongs to the GARS family. (422 aa)
	typA	GTP-binding elongation factor protein. (627 aa)
	ADJ65409.1	Oxidoreductase. (327 aa)
	murA	UDP-N-acetylglucosamine 1-carboxyvinyltransferase protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily. (416 aa)
	murA-2	UDP-N-acetylglucosamine enolpyruvyl transferase protein. (433 aa)

Your Current Organism:

Herbaspirillum seropedicae

NCBI taxonomy Id: 757424
Other names: H. seropedicae SmR1, Herbaspirillum seropedicae SmR1, Herbaspirillum seropedicae str. SmR1, Herbaspirillum seropedicae strain SmR1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ampD	cheA-4	Hsero_0379	Hsero_3018	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Two component hybrid sensor histidine kinase/response regulator protein.	0.416
ampD	exbD	Hsero_0379	Hsero_0293	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.440
ampD	exbD-2	Hsero_0379	Hsero_0604	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.440
ampD	exbD-3	Hsero_0379	Hsero_0689	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.440
ampD	exbD-4	Hsero_0379	Hsero_1219	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.443
ampD	exbD-5	Hsero_0379	Hsero_2609	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.440
ampD	exbD-6	Hsero_0379	Hsero_2817	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Biopolymer transport ExbD/TolR protein.	0.440
ampD	murA	Hsero_0379	Hsero_4071	anhydro-N-acetylmuramyl-tripeptide amidase protein.	UDP-N-acetylglucosamine 1-carboxyvinyltransferase protein; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.	0.538
ampD	murA-2	Hsero_0379	Hsero_4502	anhydro-N-acetylmuramyl-tripeptide amidase protein.	UDP-N-acetylglucosamine enolpyruvyl transferase protein.	0.538
ampD	murI	Hsero_0379	Hsero_1542	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Glutamate racemase protein; Provides the (R)-glutamate required for cell wall biosynthesis.	0.455
ampD	opuBC	Hsero_0379	Hsero_1714	anhydro-N-acetylmuramyl-tripeptide amidase protein.	ABC-type proline/glycine betaine transport system, periplasmic binding component protein; Osmoprotectant.	0.450
ampD	purD	Hsero_0379	Hsero_3557	anhydro-N-acetylmuramyl-tripeptide amidase protein.	Phosphoribosylamine-glycine ligase protein; Belongs to the GARS family.	0.450
ampD	typA	Hsero_0379	Hsero_3601	anhydro-N-acetylmuramyl-tripeptide amidase protein.	GTP-binding elongation factor protein.	0.468
cheA	cheA-4	Hsero_1704	Hsero_3018	Chemotaxis histidine kinase protein.	Two component hybrid sensor histidine kinase/response regulator protein.	0.614
cheA	cheR	Hsero_1704	Hsero_0625	Chemotaxis histidine kinase protein.	Chemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.917
cheA	cheR-2	Hsero_1704	Hsero_1702	Chemotaxis histidine kinase protein.	Chemotaxis protein methyltransferase protein; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.981
cheA	cheR-3	Hsero_1704	Hsero_2020	Chemotaxis histidine kinase protein.	Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.	0.853
cheA	cheR-4	Hsero_1704	Hsero_3020	Chemotaxis histidine kinase protein.	Methyltransferase of chemotaxis proteins protein.	0.907
cheA	cheR-5	Hsero_1704	Hsero_3379	Chemotaxis histidine kinase protein.	Protein-glutamate methyltransferase chemotaxis response regulator protein.	0.784
cheA	cheW	Hsero_1704	Hsero_0624	Chemotaxis histidine kinase protein.	Positive regulator of CheA protein activity protein.	0.991

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