(7 nodes) Mixed, incl. Ctr copper transporter, and Cellular response to zinc ion network (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scyTo_0011170	Uncharacterized protein. (462 aa)
	scyTo_0009270	Uncharacterized protein. (251 aa)
	scyTo_0014482	Uncharacterized protein. (426 aa)
	scyTo_0003871	Uncharacterized protein. (218 aa)
	scyTo_0016554	Uncharacterized protein. (478 aa)
	scyTo_0020167	Uncharacterized protein. (140 aa)
	scyTo_0019652	Uncharacterized protein. (351 aa)

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

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Export your current network:

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same PNG format, but at higher resolution

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0003871	scyTo_0020167	A0A401PNQ2	A0A401Q0U7	Uncharacterized protein.	Uncharacterized protein.	0.461
scyTo_0009270	scyTo_0016554	A0A401NJI9	A0A401PTD5	Uncharacterized protein.	Uncharacterized protein.	0.585
scyTo_0009270	scyTo_0019652	A0A401NJI9	A0A401Q405	Uncharacterized protein.	Uncharacterized protein.	0.585
scyTo_0014482	scyTo_0020167	A0A401NNC4	A0A401Q0U7	Uncharacterized protein.	Uncharacterized protein.	0.506
scyTo_0016554	scyTo_0009270	A0A401PTD5	A0A401NJI9	Uncharacterized protein.	Uncharacterized protein.	0.585
scyTo_0016554	scyTo_0019652	A0A401PTD5	A0A401Q405	Uncharacterized protein.	Uncharacterized protein.	0.793
scyTo_0016554	scyTo_0020167	A0A401PTD5	A0A401Q0U7	Uncharacterized protein.	Uncharacterized protein.	0.507
scyTo_0019652	scyTo_0009270	A0A401Q405	A0A401NJI9	Uncharacterized protein.	Uncharacterized protein.	0.585
scyTo_0019652	scyTo_0016554	A0A401Q405	A0A401PTD5	Uncharacterized protein.	Uncharacterized protein.	0.793
scyTo_0019652	scyTo_0020167	A0A401Q405	A0A401Q0U7	Uncharacterized protein.	Uncharacterized protein.	0.507
scyTo_0020167	scyTo_0003871	A0A401Q0U7	A0A401PNQ2	Uncharacterized protein.	Uncharacterized protein.	0.461
scyTo_0020167	scyTo_0014482	A0A401Q0U7	A0A401NNC4	Uncharacterized protein.	Uncharacterized protein.	0.506
scyTo_0020167	scyTo_0016554	A0A401Q0U7	A0A401PTD5	Uncharacterized protein.	Uncharacterized protein.	0.507
scyTo_0020167	scyTo_0019652	A0A401Q0U7	A0A401Q405	Uncharacterized protein.	Uncharacterized protein.	0.507