(10 nodes) Mixed, incl. Protein deubiquitination involved in ubiquitin-dependent protein catabolic process, and MyD88-dependent toll-like receptor signaling pathway network (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scyTo_0004105	CC2-LZ domain-containing protein. (359 aa)
	scyTo_0001305	Uncharacterized protein. (848 aa)
	scyTo_0002832	Uncharacterized protein. (709 aa)
	scyTo_0016899	Uncharacterized protein. (575 aa)
	scyTo_0021262	Death domain-containing protein. (243 aa)
	scyTo_0022725	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family. (115 aa)
	scyTo_0022209	Uncharacterized protein. (165 aa)
	scyTo_0022269	Uncharacterized protein. (80 aa)
	scyTo_0022359	Uncharacterized protein. (124 aa)
	scyTo_0024713	A20-type domain-containing protein. (486 aa)

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0001305	scyTo_0002832	A0A401PBP1	A0A401PKY9	Uncharacterized protein.	Uncharacterized protein.	0.654
scyTo_0001305	scyTo_0004105	A0A401PBP1	A0A401NKX3	Uncharacterized protein.	CC2-LZ domain-containing protein.	0.901
scyTo_0001305	scyTo_0016899	A0A401PBP1	A0A401Q0T7	Uncharacterized protein.	Uncharacterized protein.	0.887
scyTo_0001305	scyTo_0021262	A0A401PBP1	A0A401Q0X8	Uncharacterized protein.	Death domain-containing protein.	0.886
scyTo_0001305	scyTo_0022209	A0A401PBP1	A0A401Q8C6	Uncharacterized protein.	Uncharacterized protein.	0.976
scyTo_0001305	scyTo_0022269	A0A401PBP1	A0A401Q9J8	Uncharacterized protein.	Uncharacterized protein.	0.976
scyTo_0001305	scyTo_0022359	A0A401PBP1	A0A401QB25	Uncharacterized protein.	Uncharacterized protein.	0.598
scyTo_0001305	scyTo_0022725	A0A401PBP1	A0A401Q6D6	Uncharacterized protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.997
scyTo_0002832	scyTo_0001305	A0A401PKY9	A0A401PBP1	Uncharacterized protein.	Uncharacterized protein.	0.654
scyTo_0002832	scyTo_0004105	A0A401PKY9	A0A401NKX3	Uncharacterized protein.	CC2-LZ domain-containing protein.	0.736
scyTo_0002832	scyTo_0021262	A0A401PKY9	A0A401Q0X8	Uncharacterized protein.	Death domain-containing protein.	0.581
scyTo_0002832	scyTo_0022209	A0A401PKY9	A0A401Q8C6	Uncharacterized protein.	Uncharacterized protein.	0.736
scyTo_0002832	scyTo_0022269	A0A401PKY9	A0A401Q9J8	Uncharacterized protein.	Uncharacterized protein.	0.736
scyTo_0002832	scyTo_0022359	A0A401PKY9	A0A401QB25	Uncharacterized protein.	Uncharacterized protein.	0.615
scyTo_0002832	scyTo_0022725	A0A401PKY9	A0A401Q6D6	Uncharacterized protein.	TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.	0.828
scyTo_0004105	scyTo_0001305	A0A401NKX3	A0A401PBP1	CC2-LZ domain-containing protein.	Uncharacterized protein.	0.901
scyTo_0004105	scyTo_0002832	A0A401NKX3	A0A401PKY9	CC2-LZ domain-containing protein.	Uncharacterized protein.	0.736
scyTo_0004105	scyTo_0016899	A0A401NKX3	A0A401Q0T7	CC2-LZ domain-containing protein.	Uncharacterized protein.	0.736
scyTo_0004105	scyTo_0021262	A0A401NKX3	A0A401Q0X8	CC2-LZ domain-containing protein.	Death domain-containing protein.	0.471
scyTo_0004105	scyTo_0022359	A0A401NKX3	A0A401QB25	CC2-LZ domain-containing protein.	Uncharacterized protein.	0.736