7 items (Scyliorhinus torazame) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scyTo_0022207	Uncharacterized protein. (48 aa)
	scyTo_0020769	THF_DHG_CYH domain-containing protein. (150 aa)
	scyTo_0020030	Uncharacterized protein. (380 aa)
	scyTo_0017565	Uncharacterized protein. (271 aa)
	scyTo_0017564	Uncharacterized protein. (674 aa)
	scyTo_0004849	Uncharacterized protein. (331 aa)
	scyTo_0017399	Uncharacterized protein. (176 aa)

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0004849	scyTo_0017399	A0A401NY07	A0A401PS06	Uncharacterized protein.	Uncharacterized protein.	0.989
scyTo_0004849	scyTo_0017564	A0A401NY07	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.937
scyTo_0004849	scyTo_0017565	A0A401NY07	A0A401PVR8	Uncharacterized protein.	Uncharacterized protein.	0.985
scyTo_0004849	scyTo_0020030	A0A401NY07	A0A401PXH3	Uncharacterized protein.	Uncharacterized protein.	0.922
scyTo_0004849	scyTo_0020769	A0A401NY07	A0A401Q1W6	Uncharacterized protein.	THF_DHG_CYH domain-containing protein.	0.902
scyTo_0004849	scyTo_0022207	A0A401NY07	A0A401Q8C1	Uncharacterized protein.	Uncharacterized protein.	0.902
scyTo_0017399	scyTo_0004849	A0A401PS06	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.989
scyTo_0017399	scyTo_0017564	A0A401PS06	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.986
scyTo_0017399	scyTo_0020030	A0A401PS06	A0A401PXH3	Uncharacterized protein.	Uncharacterized protein.	0.952
scyTo_0017564	scyTo_0004849	A0A401PVN1	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.937
scyTo_0017564	scyTo_0017399	A0A401PVN1	A0A401PS06	Uncharacterized protein.	Uncharacterized protein.	0.986
scyTo_0017564	scyTo_0017565	A0A401PVN1	A0A401PVR8	Uncharacterized protein.	Uncharacterized protein.	0.922
scyTo_0017564	scyTo_0020030	A0A401PVN1	A0A401PXH3	Uncharacterized protein.	Uncharacterized protein.	0.832
scyTo_0017565	scyTo_0004849	A0A401PVR8	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.985
scyTo_0017565	scyTo_0017564	A0A401PVR8	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.922
scyTo_0017565	scyTo_0020030	A0A401PVR8	A0A401PXH3	Uncharacterized protein.	Uncharacterized protein.	0.952
scyTo_0020030	scyTo_0004849	A0A401PXH3	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.922
scyTo_0020030	scyTo_0017399	A0A401PXH3	A0A401PS06	Uncharacterized protein.	Uncharacterized protein.	0.952
scyTo_0020030	scyTo_0017564	A0A401PXH3	A0A401PVN1	Uncharacterized protein.	Uncharacterized protein.	0.832
scyTo_0020030	scyTo_0017565	A0A401PXH3	A0A401PVR8	Uncharacterized protein.	Uncharacterized protein.	0.952