5 items (Scyliorhinus torazame) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scyTo_0004849	Uncharacterized protein. (331 aa)
	scyTo_0012420	MGS domain-containing protein. (589 aa)
	scyTo_0006785	GTP_cyclohydroI domain-containing protein. (245 aa)
	scyTo_0017061	GTP_cyclohydroI domain-containing protein. (237 aa)
	scyTo_0027297	Uncharacterized protein. (234 aa)

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0004849	scyTo_0006785	A0A401NY07	A0A401PJZ7	Uncharacterized protein.	GTP_cyclohydroI domain-containing protein.	0.664
scyTo_0004849	scyTo_0012420	A0A401NY07	A0A401P8B2	Uncharacterized protein.	MGS domain-containing protein.	0.970
scyTo_0004849	scyTo_0017061	A0A401NY07	A0A401Q3R4	Uncharacterized protein.	GTP_cyclohydroI domain-containing protein.	0.664
scyTo_0004849	scyTo_0027297	A0A401NY07	A0A401QMD8	Uncharacterized protein.	Uncharacterized protein.	0.970
scyTo_0006785	scyTo_0004849	A0A401PJZ7	A0A401NY07	GTP_cyclohydroI domain-containing protein.	Uncharacterized protein.	0.664
scyTo_0012420	scyTo_0004849	A0A401P8B2	A0A401NY07	MGS domain-containing protein.	Uncharacterized protein.	0.970
scyTo_0017061	scyTo_0004849	A0A401Q3R4	A0A401NY07	GTP_cyclohydroI domain-containing protein.	Uncharacterized protein.	0.664
scyTo_0027297	scyTo_0004849	A0A401QMD8	A0A401NY07	Uncharacterized protein.	Uncharacterized protein.	0.970