(15 nodes) Shigellosis network (Scyliorhinus torazame)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	scyTo_0022209	Uncharacterized protein. (165 aa)
	scyTo_0022183	FHA domain-containing protein. (221 aa)
	scyTo_0016337	Uncharacterized protein. (195 aa)
	scyTo_0018754	Uncharacterized protein. (185 aa)
	scyTo_0018617	Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration. (81 aa)
	scyTo_0020953	Uncharacterized protein. (117 aa)
	scyTo_0018944	SH3 domain-containing protein. (143 aa)
	scyTo_0008507	Chromo domain-containing protein. (139 aa)
	scyTo_0012208	F-BAR domain-containing protein. (414 aa)
	scyTo_0012127	Uncharacterized protein. (196 aa)
	scyTo_0010121	Uncharacterized protein. (718 aa)
	scyTo_0009589	Uncharacterized protein. (536 aa)
	scyTo_0004105	CC2-LZ domain-containing protein. (359 aa)
	scyTo_0023627	Ubiquinone biosynthesis protein; Lipid-binding protein involved in the biosynthesis of coenzyme Q, also named ubiquinone, an essential lipid-soluble electron transporter for aerobic cellular respiration. (73 aa)
	scyTo_0022269	Uncharacterized protein. (80 aa)

Your Current Organism:

Scyliorhinus torazame

NCBI taxonomy Id: 75743
Other names: S. torazame, cloudy catshark

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
scyTo_0009589	scyTo_0012208	A0A401NPM6	A0A401P488	Uncharacterized protein.	F-BAR domain-containing protein.	0.741
scyTo_0009589	scyTo_0018944	A0A401NPM6	A0A401PPH0	Uncharacterized protein.	SH3 domain-containing protein.	0.736
scyTo_0010121	scyTo_0020953	A0A401P0H4	A0A401PRV0	Uncharacterized protein.	Uncharacterized protein.	0.961
scyTo_0012208	scyTo_0009589	A0A401P488	A0A401NPM6	F-BAR domain-containing protein.	Uncharacterized protein.	0.741
scyTo_0012208	scyTo_0018944	A0A401P488	A0A401PPH0	F-BAR domain-containing protein.	SH3 domain-containing protein.	0.897
scyTo_0018754	scyTo_0020953	A0A401Q242	A0A401PRV0	Uncharacterized protein.	Uncharacterized protein.	0.961
scyTo_0018944	scyTo_0009589	A0A401PPH0	A0A401NPM6	SH3 domain-containing protein.	Uncharacterized protein.	0.736
scyTo_0018944	scyTo_0012208	A0A401PPH0	A0A401P488	SH3 domain-containing protein.	F-BAR domain-containing protein.	0.897
scyTo_0020953	scyTo_0010121	A0A401PRV0	A0A401P0H4	Uncharacterized protein.	Uncharacterized protein.	0.961
scyTo_0020953	scyTo_0018754	A0A401PRV0	A0A401Q242	Uncharacterized protein.	Uncharacterized protein.	0.961