STRINGSTRING
msbA_2 msbA_2 apxIB_3 apxIB_3 cydD_1 cydD_1 NCTC8284_00198 NCTC8284_00198 msbA_1 msbA_1 NCTC8284_03490 NCTC8284_03490 cydD_2 cydD_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
msbA_2Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (587 aa)
apxIB_3Unannotated protein. (727 aa)
cydD_1Unannotated protein. (581 aa)
NCTC8284_00198Unannotated protein. (552 aa)
msbA_1Unannotated protein. (653 aa)
NCTC8284_03490Unannotated protein. (616 aa)
cydD_2Unannotated protein. (586 aa)
Your Current Organism:
Rodentibacter pneumotropicus
NCBI taxonomy Id: 758
Other names: ATCC 35149, CCUG 12398, CIP 66.16, DSM 21403, JCM 14074, LMG 4224, LMG:4224, NCTC 8141, Pasteurella pneumotropica, Pasteurellaceae bacterium Ac63, R. pneumotropicus
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