STRINGSTRING
rpoA_2 rpoA_2 dppC_2 dppC_2 sotB_1 sotB_1 trxB_2 trxB_2 NCTC8284_03075 NCTC8284_03075 trxA trxA tsaA tsaA NCTC8284_01578 NCTC8284_01578 ulaG_2 ulaG_2 lrp lrp sucB_2 sucB_2 ftnB ftnB ftnA ftnA secF secF secD secD naiP naiP sodC sodC pfhB1_1 pfhB1_1 ampG ampG yhjE_2 yhjE_2 ndk_1 ndk_1 NCTC8284_01194 NCTC8284_01194 secG secG sodA sodA mlaD mlaD NCTC8284_02899 NCTC8284_02899 aceF aceF NCTC8284_02749 NCTC8284_02749 D3M82_09415 D3M82_09415 D3M82_07115 D3M82_07115 NCTC8284_02738 NCTC8284_02738 NCTC8284_02735 NCTC8284_02735 asnC_3 asnC_3 tpx tpx msbA_2 msbA_2 ribD ribD fkpA fkpA GCA_000730685_02028 GCA_000730685_02028 hsrA hsrA hbpA_1 hbpA_1 oppB_2 oppB_2 oppC oppC NCTC8284_00520 NCTC8284_00520 rpoC rpoC rpoB_2 rpoB_2 NCTC8284_00198 NCTC8284_00198 tufA1_1 tufA1_1 NCTC8284_00083 NCTC8284_00083 ompH1 ompH1 asnC_4 asnC_4 NCTC8284_03934 NCTC8284_03934 NCTC8284_03928 NCTC8284_03928 secY secY NCTC8284_03865 NCTC8284_03865 pstS pstS secE secE NCTC8284_00723 NCTC8284_00723 secA secA NCTC8284_03490 NCTC8284_03490 bcp bcp ompH2_2 ompH2_2 rpoZ rpoZ bcr_1_2 bcr_1_2 dppB_1 dppB_1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpoA_2Unannotated protein. (327 aa)
dppC_2Unannotated protein. (295 aa)
sotB_1Unannotated protein. (392 aa)
trxB_2Unannotated protein. (317 aa)
NCTC8284_03075Unannotated protein. (285 aa)
trxAUnannotated protein. (107 aa)
tsaAUnannotated protein. (200 aa)
NCTC8284_01578Unannotated protein. (356 aa)
ulaG_2Unannotated protein. (363 aa)
lrpUnannotated protein. (159 aa)
sucB_2Unannotated protein. (409 aa)
ftnBUnannotated protein; Iron-storage protein. (166 aa)
ftnAUnannotated protein; Iron-storage protein. (162 aa)
secFUnannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (324 aa)
secDUnannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA. (616 aa)
naiPUnannotated protein. (405 aa)
sodCUnannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family. (182 aa)
pfhB1_1Unannotated protein. (1422 aa)
ampGUnannotated protein. (424 aa)
yhjE_2Unannotated protein. (438 aa)
ndk_1Unannotated protein; Belongs to the NDK family. (140 aa)
NCTC8284_01194Unannotated protein. (442 aa)
secGUnannotated protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. (113 aa)
sodAUnannotated protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. (215 aa)
mlaDUnannotated protein. (168 aa)
NCTC8284_02899Unannotated protein. (1720 aa)
aceFUnannotated protein; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (634 aa)
NCTC8284_02749Unannotated protein. (3982 aa)
D3M82_09415Unannotated protein. (144 aa)
D3M82_07115Unannotated protein. (344 aa)
NCTC8284_02738Unannotated protein. (160 aa)
NCTC8284_02735Unannotated protein. (111 aa)
asnC_3Unannotated protein. (142 aa)
tpxUnannotated protein; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (165 aa)
msbA_2Unannotated protein; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation. (587 aa)
ribDUnannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (373 aa)
fkpAUnannotated protein. (207 aa)
GCA_000730685_02028Unannotated protein. (394 aa)
hsrAUnannotated protein; Belongs to the major facilitator superfamily. (464 aa)
hbpA_1Unannotated protein. (546 aa)
oppB_2Unannotated protein. (306 aa)
oppCUnannotated protein. (307 aa)
NCTC8284_00520Unannotated protein. (485 aa)
rpoCUnannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1422 aa)
rpoB_2Unannotated protein; Belongs to the RNA polymerase beta chain family. (1342 aa)
NCTC8284_00198Unannotated protein. (552 aa)
tufA1_1Unannotated protein; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis. (394 aa)
NCTC8284_00083Unannotated protein. (167 aa)
ompH1Unannotated protein. (377 aa)
asnC_4Unannotated protein. (150 aa)
NCTC8284_03934Unannotated protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (183 aa)
NCTC8284_03928Unannotated protein. (240 aa)
secYUnannotated protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. (441 aa)
NCTC8284_03865Unannotated protein. (1484 aa)
pstSUnannotated protein. (339 aa)
secEUnannotated protein; Belongs to the SecE/SEC61-gamma family. (137 aa)
NCTC8284_00723Unannotated protein. (390 aa)
secAUnannotated protein; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane. Belongs to the SecA family. (898 aa)
NCTC8284_03490Unannotated protein. (616 aa)
bcpUnannotated protein. (155 aa)
ompH2_2Unannotated protein. (365 aa)
rpoZUnannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (88 aa)
bcr_1_2Unannotated protein. (397 aa)
dppB_1Unannotated protein. (333 aa)
Your Current Organism:
Rodentibacter pneumotropicus
NCBI taxonomy Id: 758
Other names: ATCC 35149, CCUG 12398, CIP 66.16, DSM 21403, JCM 14074, LMG 4224, LMG:4224, NCTC 8141, Pasteurella pneumotropica, Pasteurellaceae bacterium Ac63, R. pneumotropicus
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