(7 nodes) Bacterial extracellular solute-binding protein, and ABC-type ferric iron transporter activity network (Mannheimia haemolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	malK_1	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	AKA11067.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	fbpA	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (342 aa)
	AKA12001.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (345 aa)
	AKA12555.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
	cysW	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)
	fbpC	Ferric transporter ATP-binding subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system. (349 aa)

Your Current Organism:

Mannheimia haemolytica

NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKA11067.1	AKA12001.1	WC39_05065	WC39_10095	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AKA11067.1	AKA12555.1	WC39_05065	WC39_13065	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AKA11067.1	cysW	WC39_05065	WC39_13070	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
AKA11067.1	fbpA	WC39_05065	WC39_05070	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AKA11067.1	fbpC	WC39_05065	WC39_13075	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferric transporter ATP-binding subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.871
AKA11067.1	malK_1	WC39_05065	WC39_05060	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
AKA12001.1	AKA11067.1	WC39_10095	WC39_05065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.910
AKA12001.1	AKA12555.1	WC39_10095	WC39_13065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AKA12001.1	cysW	WC39_10095	WC39_13070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973
AKA12001.1	fbpA	WC39_10095	WC39_05070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AKA12001.1	fbpC	WC39_10095	WC39_13075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferric transporter ATP-binding subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.905
AKA12001.1	malK_1	WC39_10095	WC39_05060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
AKA12555.1	AKA11067.1	WC39_13065	WC39_05065	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
AKA12555.1	AKA12001.1	WC39_13065	WC39_10095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AKA12555.1	cysW	WC39_13065	WC39_13070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.988
AKA12555.1	fbpA	WC39_13065	WC39_05070	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.919
AKA12555.1	fbpC	WC39_13065	WC39_13075	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Ferric transporter ATP-binding subunit; Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import. Responsible for energy coupling to the transport system.	0.941
AKA12555.1	malK_1	WC39_13065	WC39_05060	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.868
cysW	AKA11067.1	WC39_13070	WC39_05065	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
cysW	AKA12001.1	WC39_13070	WC39_10095	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.973

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