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| | AKA11639.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (168 aa) |
| | ssb_2 | Single-stranded DNA-binding protein; Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism. (147 aa) |
| | radA | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. (459 aa) |
| | nth | Endonuclease III; DNA-(apurinic or apyrimidinic site) lyase; has apurinic or apyrimidinic endonuclease activity and DNA N-glycosylase activity; removed damaged DNA at cytosines, thymines and guanines; Derived by automated computational analysis using gene prediction method: Protein Homology. (210 aa) |
| | ogt | Cysteine methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (184 aa) |
| | arcB_3 | Aerobic respiration control protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa) |
| | dsbA_2 | Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa) |
| | bcp | Bacterioferritin comigratory protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (155 aa) |
| | recB_5 | Exodeoxyribonuclease V subunit beta; Derived by automated computational analysis using gene prediction method: Protein Homology. (1174 aa) |
| | ung | uracil-DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (229 aa) |
| | umuD | Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | nfo_2 | Endonuclease IV; Assists in DNA repair by cleaving phosphodiester bonds at apurinic or apyrimidinic sties to produce new 5' ends that are base-free deoxyribose 5-phosphate residues; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa) |
| | ycdY | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (189 aa) |
| | lon | DNA-binding protein; ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short- lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner. (800 aa) |
| | recQ | ATP-dependent DNA helicase RecQ; Functions in blocking illegitimate recombination, enhancing topoisomerase activity, initiating SOS signaling and clearing blocked replication forks; component of the RecF recombinational pathway; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (612 aa) |
| | AKA11966.1 | Hypothetical protein; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (113 aa) |
| | lexA | LexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (211 aa) |
| | mutH_2 | DNA mismatch repair protein MutH; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa) |
| | ygdQ | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa) |
| | AKA12002.1 | sprT; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa) |
| | AKA12004.1 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa) |
| | AKA12015.1 | ABC transporter ATPase; Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; Derived by automated computational analysis using gene prediction method: Protein Homology. (654 aa) |
| | fixJ | Tetrathionate response regulatory protein TtrR; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa) |
| | fixL | Tetrathionate reductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa) |
| | dinB_2 | DNA polymerase IV; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the DNA polymerase type-Y family. (360 aa) |
| | AKA12154.1 | Bacteriophage protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (115 aa) |
| | iga_4 | S6 family igA-specific metalloendopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (950 aa) |
| | ruvC | Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (192 aa) |
| | AKA12170.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the BolA/IbaG family. (86 aa) |
| | AKA12171.1 | NTP binding protein (Contains STAS domain); Derived by automated computational analysis using gene prediction method: Protein Homology. (107 aa) |
| | mfd_2 | Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1177 aa) |
| | ligA_1 | DNA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa) |
| | AKA12249.1 | Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (272 aa) |
| | narL_1 | Nitrate/nitrite response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa) |
| | arcA_2 | TorR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (240 aa) |
| | AKA12291.1 | Periplasmic/secreted protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (239 aa) |
| | dsbA_1 | Thiol:disulfide interchange protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa) |
| | grxA | Glutaredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (87 aa) |
| | AKA12355.1 | Glutathione peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa) |
| | psiE | Protein PsiE; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PsiE family. (139 aa) |
| | AKA12414.1 | Exodeoxyribonuclease V subunit gamma; Derived by automated computational analysis using gene prediction method: Protein Homology. (1096 aa) |
| | helD_1 | Derived by automated computational analysis using gene prediction method: Protein Homology. (926 aa) |
| | yggX | Iron transporter; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (89 aa) |
| | mutY | Adenine glycosylase; Adenine glycosylase active on G-A mispairs. (381 aa) |
| | lapB | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa) |
| | AKA12610.1 | Alkylhydroperoxidase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (180 aa) |
| | AKA10213.1 | Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (103 aa) |
| | recG_1 | ATP-dependent DNA helicase RecG; Catalyzes branch migration in Holliday junction intermediates; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa) |
| | AKA10255.1 | Thioredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) |
| | AKA10257.1 | Competence protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa) |
| | mutS_1 | DNA mismatch repair protein MutS; This protein performs the mismatch recognition step during the DNA repair process; Derived by automated computational analysis using gene prediction method: Protein Homology. (865 aa) |
| | AKA10273.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0250 family. (99 aa) |
| | sxy | DNA transformation protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa) |
| | ulaE | L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; Derived by automated computational analysis using gene prediction method: Protein Homology. (286 aa) |
| | tpx | Peroxidase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Tpx subfamily. (165 aa) |
| | AKA10436.1 | S-formylglutathione hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (276 aa) |
| | katA_3 | Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology. (502 aa) |
| | mutL | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. (627 aa) |
| | mutM | formamidopyrimidine-DNA glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. (274 aa) |
| | AKA10486.1 | Competence protein ComF; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa) |
| | tag_1 | DNA-3-methyladenine glycosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa) |
| | AKA10575.1 | Phage antirepressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (281 aa) |
| | hslR | Ribosome-associated heat shock protein Hsp15; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa) |
| | recN_2 | Recombination and repair protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa) |
| | AKA10653.1 | Periplasmic lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (123 aa) |
| | AKA10697.1 | Nucleotide-binding protein; Nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa) |
| | recA | Recombinase RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (368 aa) |
| | yjiY | Carbon starvation protein CstA; Derived by automated computational analysis using gene prediction method: Protein Homology. (528 aa) |
| | xthA | Exodeoxyribonuclease III; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa) |
| | ligA | NAD-dependent DNA ligase LigA; This protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; Derived by automated computational analysis using gene prediction method: Protein Homology. (685 aa) |
| | trxB_2 | Thioredoxin reductase; Catalyzes the transfer of electrons from NADPH to thioredoxin; FAD/NAD(P) binding; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa) |
| | tbpB_2 | Transferrin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (585 aa) |
| | recF | Recombination protein F; The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (361 aa) |
| | recR | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (201 aa) |
| | ruvB | ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa) |
| | ruvA | Holliday junction ATP-dependent DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (201 aa) |
| | gor_3 | Catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; Derived by automated computational analysis using gene prediction method: Protein Homology. (456 aa) |
| | sodA | Superoxide dismutase; Destroys superoxide anion radicals which are normally produced within the cells and which are toxic to biological systems; Belongs to the iron/manganese superoxide dismutase family. (213 aa) |
| | recD_3 | Exodeoxyribonuclease V subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (653 aa) |
| | msrAB_2 | Methionine sulfoxide reductase A; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (168 aa) |
| | AKA10897.1 | NADH-dependent flavin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (374 aa) |
| | AKA10979.1 | DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa) |
| | mutT | 8-oxo-dGTP diphosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (132 aa) |
| | AKA11056.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (240 aa) |
| | AKA11138.1 | Heme-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa) |
| | AKA11160.1 | Antirepressor protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (233 aa) |
| | polA_3 | DNA polymerase I; Has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; Derived by automated computational analysis using gene prediction method: Protein Homology. (952 aa) |
| | AKA11198.1 | Antirepressor; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa) |
| | ssb_1 | Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa) |
| | AKA11222.1 | Endodeoxyribonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (119 aa) |
| | recJ_1 | ssDNA exonuclease RecJ; 5'-3' single-stranded-DNA-specific exonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa) |
| | AKA11261.1 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (563 aa) |
| | AKA11272.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (76 aa) |
| | AKA12724.1 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa) |
| | AKA11319.1 | Single-stranded DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa) |
| | AKA11327.1 | Lipoprotein bor; Derived by automated computational analysis using gene prediction method: Protein Homology. (92 aa) |
| | AKA11328.1 | Lipoprotein bor; Derived by automated computational analysis using gene prediction method: Protein Homology. (98 aa) |
| | deaD_2 | DEAD/DEAH box helicase; Participates in the assembly of the large subunit of the ribosome; plays a key role in optimal cell growth at low temperature and is required for normal cell division; Derived by automated computational analysis using gene prediction method: Protein Homology. (602 aa) |
| | phoR_2 | ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (426 aa) |
| | phoB_1 | Transcriptional regulator PhoB; Two component response regulator for the phosphate regulon; PhoR phosphorylates PhoB; Derived by automated computational analysis using gene prediction method: Protein Homology. (228 aa) |
| | AKA11396.1 | Recombinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (760 aa) |
| | AKA11409.1 | Metal-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa) |
| | cpxA_2 | Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (461 aa) |
| | yycF | Response regulator in two-component regulatory system with CpxA; part of the envelope stress response system; Derived by automated computational analysis using gene prediction method: Protein Homology. (242 aa) |
| | uvrB_2 | The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; Derived by automated computational analysis using gene prediction method: Protein Homology. (672 aa) |
| | efeN | Peroxidase; Involved in the recovery of exogenous heme iron. Extracts iron from heme while preserving the tetrapyrrol ring intact. Belongs to the DyP-type peroxidase family. (397 aa) |
| | AKA11502.1 | DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa) |
| | sbcB | Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; Derived by automated computational analysis using gene prediction method: Protein Homology. (515 aa) |
| | yfiH | Laccase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the multicopper oxidase YfiH/RL5 family. (245 aa) |
| | uvrA_1 | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (942 aa) |
| | ssb_3 | Single-stranded DNA-binding protein; Binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa) |
