(23 nodes) MetI-like superfamily network (Mannheimia haemolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	potC	Spermidine/putrescine ABC transporter permease; Can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; Derived by automated computational analysis using gene prediction method: Protein Homology. (255 aa)
	oppB	Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
	dppC	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (297 aa)
	dppB	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
	tcyB	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (238 aa)
	oppC_1	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (299 aa)
	artM	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology. (227 aa)
	potB	Spermidine/putrescine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)
	malG	Maltose transporter permease; With MalKFE is involved in the transport of maltose into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)
	cmpB	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	malF	Maltose transporter membrane protein; With MalKGE is involved in maltose transport into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology. (512 aa)
	artQ	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (223 aa)
	nikB	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	modB	Part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; Derived by automated computational analysis using gene prediction method: Protein Homology. (230 aa)
	metI_1	Methionine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)
	gsiD_2	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (656 aa)
	gsiC_1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
	pstC_3	Phosphate ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (319 aa)
	pstA	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (282 aa)
	AKA11067.1	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (548 aa)
	nikC	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AKA12322.1	Thiamine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	cysW	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (678 aa)

Your Current Organism:

Mannheimia haemolytica

NCBI taxonomy Id: 75985
Other names: ATCC 33396, CCUG 12392, CCUG 408, CIP 103426, DSM 10531, M. haemolytica, NCTC 9380, Pasteurella haemolytica, strain J.A. Watt 1266AB

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AKA11067.1	cysW	WC39_05065	WC39_13070	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
artM	artQ	WC39_03715	WC39_03710	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
artQ	artM	WC39_03710	WC39_03715	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter permease subunit ArtM; With ArtPQJI acts to transport arginine across the inner membrane; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.976
artQ	tcyB	WC39_03710	WC39_02005	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.546
cysW	AKA11067.1	WC39_13070	WC39_05065	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Iron ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.907
dppB	dppC	WC39_01385	WC39_01380	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
dppB	gsiD_2	WC39_01385	WC39_09390	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933
dppB	nikC	WC39_01385	WC39_11580	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.855
dppB	oppC_1	WC39_01385	WC39_03270	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
dppC	dppB	WC39_01380	WC39_01385	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
dppC	gsiC_1	WC39_01380	WC39_09385	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
dppC	gsiD_2	WC39_01380	WC39_09390	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
dppC	nikB	WC39_01380	WC39_11575	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.857
dppC	oppB	WC39_01380	WC39_03275	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Oligopeptide transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.838
gsiC_1	dppC	WC39_09385	WC39_01380	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.859
gsiC_1	gsiD_2	WC39_09385	WC39_09390	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
gsiC_1	nikB	WC39_09385	WC39_11575	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
gsiC_1	nikC	WC39_09385	WC39_11580	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.985
gsiC_1	oppC_1	WC39_09385	WC39_03270	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; With OppABDF is involved in the transport of oligopeptides of up to 5 amino acids into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.841
gsiD_2	dppB	WC39_09390	WC39_01385	ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptide ABC transporter permease; Transports peptides consisting of two or three amino acids; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.933

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