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| | rph | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (239 aa) |
| | trmB | tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33) (tRNA(m7G46)-methyltransferase); Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (259 aa) |
| | thiG | Thiamine biosynthesis protein, gene: THIG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. (261 aa) |
| | ebdB | Beta-subunit of ethylbenzene dehydrogenase. (352 aa) |
| | ebdA | Alpha-subunit of ethylbenzene dehydrogenase. (976 aa) |
| | pmbA | Zn-dependent protease, modulator of DNA gyrase. (453 aa) |
| | gspA | Glycerol-3-phosphate dehydrogenase; Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. (328 aa) |
| | sspB | Stringent starvation protein B. (146 aa) |
| | petB | Cytochrome B subunit of cytochrome bc1; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis. (422 aa) |
| | narA | Assimilatory nitrate reductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily. (938 aa) |
| | sucD | Succinyl-CoA synthetase, alpha chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit. (297 aa) |
| | sucC | Succinyl-CoA synthetase, beta chain; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. (386 aa) |
| | hisH | Amidophosphoribosyltransferase; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF. (212 aa) |
| | aceE | Pyruvate dehydrogenase multienzyme complex, E1 component; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (891 aa) |
| | glyS | glycyl-tRNA synthetase beta chain. (696 aa) |
| | glyQ | glycyl-tRNA synthetase alpha chain. (315 aa) |
| | ebA1345 | Conserved hypothetical protein. (641 aa) |
| | ebA1348 | Hypothetical protein. (294 aa) |
| | aceF | Pyruvate dehydrogenase multienzyme complex, dihydrolipoamide acetyltransferase component (E2); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). (583 aa) |
| | lpd | Pyruvate dehydrogenase multienzyme complex, Dihydrolipoamide dehydrogenase component. (615 aa) |
| | ebA1395 | Putative zinc protease. (460 aa) |
| | accB | Acetyl-CoA carboxylase biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (150 aa) |
| | accC | Putative biotin carboxylase protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (454 aa) |
| | ebA15 | Hypothetical protein. (379 aa) |
| | poxB | Pyruvate oxidase; Belongs to the TPP enzyme family. (598 aa) |
| | ebA1514 | Predicted Coenzyme F420-reducing hydrogenase, beta subunit. (460 aa) |
| | pcm | Putative protein-L-isoaspartate o-methyltransferase. (217 aa) |
| | pyrB | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (323 aa) |
| | ebA1861 | Similar to uncharacterized protein probably involved in high-affinity Fe2+ transport. (181 aa) |
| | ebA1866 | High-affinity iron permease. (270 aa) |
| | int-4 | Integrase/recombinase; Belongs to the 'phage' integrase family. (309 aa) |
| | int-5 | Phage-related integrase; Belongs to the 'phage' integrase family. (347 aa) |
| | ebA2062 | Medium FAD-binding subunit of molybdenum enzyme. (288 aa) |
| | ebA2159 | Predicted proteasome-type protease. (269 aa) |
| | ebA2187 | Putative pyruvate decarboxylase E1 (Beta subunit) oxidoreductase protein. (326 aa) |
| | ebA2188 | Putative dihydrolipoamide acetyltransferase. (367 aa) |
| | gltD | Glutamate synthase, small subunit. (487 aa) |
| | dgt1 | Deoxyguanosinetriphosphate triphosphohydrolase-like protein; Belongs to the dGTPase family. Type 2 subfamily. (374 aa) |
| | recG | RecG-like helicases; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (652 aa) |
| | ebA2402 | DNA repair protein similar to radC-family; Belongs to the UPF0758 family. (164 aa) |
| | ebA250 | Conserved hypothetical protein. (290 aa) |
| | ebA2514 | DNA repair protein similar to radC-family; Belongs to the UPF0758 family. (164 aa) |
| | hsdM | Type I site-specific deoxyribonuclease,methylase subunit. (543 aa) |
| | hsdS | Restriction modification system specificity subunit. (424 aa) |
| | cysD | ATP sulfurylase, small subunit. (304 aa) |
| | cysN | ATP sulfurylase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily. (428 aa) |
| | hslU | Heat shock protein chaperone; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. (442 aa) |
| | hslV | Putative heat shock protein; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery. (179 aa) |
| | ebA2664 | Hypothetical protein. (350 aa) |
| | ebA2682 | Putative helicase. (388 aa) |
| | int-9 | Phage-related integrase; Belongs to the 'phage' integrase family. (335 aa) |
| | recD | DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous [...] (622 aa) |
| | recB | ATP-dependent exoDNAse beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and rep [...] (1229 aa) |
| | recC | Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...] (1122 aa) |
| | ebA2737 | Hypothetical protein. (534 aa) |
| | fdhA | Formate dehydrogenase alpha subunit,molybdenum or tungsten enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (950 aa) |
| | boxB | Benzoyl-CoA oxygenase component B. (473 aa) |
| | ebA284 | Similar to DNA helicase UvrD. (691 aa) |
| | dnaN | DNA polymerase III (Beta chain); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] (367 aa) |
| | ebA2875 | Conserved hypothetical protein; Belongs to the UPF0145 family. (106 aa) |
| | fdhC | Putative Formate dehydrogenase subunit C. (375 aa) |
| | fdhA-2 | Formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (968 aa) |
| | uvrA2 | Similar to excinuclease ABC subunit A (DNA repair ATP-binding); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (1887 aa) |
| | gatC | Putative glutamine amidotransferase,subunit C. (273 aa) |
| | rep | Similar to ATP-dependent DNA helicase,putative replication protein; Rep helicase is a single-stranded DNA-dependent ATPase involved in DNA replication; it can initiate unwinding at a nick in the DNA. It binds to the single-stranded DNA and acts in a progressive fashion along the DNA in the 3' to 5' direction. (660 aa) |
| | polC | Similar to DNA polymerase III alpha chain; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. (1070 aa) |
| | xccA | Putative carboxylase subunit of acetyl-CoA carboxylase-like enzyme. (495 aa) |
| | ebA3157 | Probable Mg(2+) chelatase family related protein. (497 aa) |
| | xccC | Biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme. (460 aa) |
| | ebA3224 | Putative ribose-phosphate pyrophosphokinase. (313 aa) |
| | rpoN1 | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (477 aa) |
| | ebA3413 | Conserved hypothetical protein. (728 aa) |
| | rpoZ | DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (71 aa) |
| | cho | Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein). (469 aa) |
| | paaA | Putativ ring-oxidation complex protein 1. (334 aa) |
| | paaB | PaaB protein; Related to aerobic phenylacetate degradation. (95 aa) |
| | paaC | Putativ ring-hydroxylation complex protein 2. (255 aa) |
| | paaE | Probable ring-hydroxylation complex protein 4. (359 aa) |
| | ribH | 6,7-dimethyl-8-ribityllumazine synthase (riboflavin synthase beta-chain); Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin. (156 aa) |
| | ruvC | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (203 aa) |
| | cobQ | Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. (489 aa) |
| | ebA3716 | Conserved hypothetical protein, predicted ATPase with chaperone activity. (435 aa) |
| | pccB | Propionyl-CoA carboxylase beta subunit. (510 aa) |
| | pccA | Propionyl-CoA carboxylase, alpha subunit. (666 aa) |
| | dldH | D-lactate dehydrogenase (acceptor: cytochrome). (469 aa) |
| | rpoB | DNA-directed RNA polymerase, beta chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1377 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1409 aa) |
| | rpoA | DNA-directed RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (326 aa) |
| | uvrA | UvrABC system protein A (excinuclease ABC subunit A); The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (956 aa) |
| | ruvB | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (353 aa) |
| | ruvA | Holliday junction DNA helicase; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa) |
| | accA | Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (380 aa) |
| | hyfI | Subunit of putative formate hydrogenlyase-like membrane complex. (187 aa) |
| | hyfG | Subunit of formate hydrogenlyase-like membrane complex, related to large subunit of hydrogenases. (551 aa) |
| | hyfF | Formate hydrogenlyase subunit, similar to NuoM subunit of complex I. (484 aa) |
| | rpoH | Sigma-32 factor RpoH (RNA polymerase sigma factor); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes. (283 aa) |
| | rpoD | DNA-dependent RNA polymerase sigma subunits (Sigma70/32); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. (663 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (609 aa) |
| | holA | DNA polymerase III, delta subunit. (335 aa) |
| | uvrD | ATP-dependent DNA helicase. (740 aa) |
| | dnaE | DNA polymerase III alpha chain. (1164 aa) |
| | ispA | Polyprenyl synthetase (EC 2.5.1.10),gene: ISPA OR NE1160; Belongs to the FPP/GGPP synthase family. (298 aa) |
| | ebA4463 | Putative glycerol-3-phosphate dehydrogenase. (542 aa) |
| | glcD | Glycolate oxidase (FAD-linked subunit) oxidoreductase protein. (505 aa) |
| | rpoE | RNA polymerase sigma factor (sigma24); Belongs to the sigma-70 factor family. ECF subfamily. (189 aa) |
| | cho-2 | Excinuclease Cho, similar to DNA polymerase III epsilon subunit family. (478 aa) |
| | ebA4657 | Putative propionyl-CoA carboxylase (Beta subunit). (535 aa) |
| | ebA4659 | Putative acyl-CoA carboxylase alpha chain protein. (667 aa) |
| | ilvB | Putative acetolactate synthase large subunit. (555 aa) |
| | leuC | 3-isopropylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. (469 aa) |
| | leuD | 3-isopropylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. (213 aa) |
| | accD | Putative acetyl-coenzyme A carboxylase carboxyl transferase (Subunit beta) protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (289 aa) |
| | carA | Carbamoyl-phosphate synthase small chain; Belongs to the CarA family. (381 aa) |
| | carB | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. (1075 aa) |
| | nuoC | NADH dehydrogenase I, chain C; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 30 kDa subunit family. (201 aa) |
| | nuoD | NADH dehydrogenase I, chain D; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient; Belongs to the complex I 49 kDa subunit family. (417 aa) |
| | nuoE | NADH dehydrogenase I, chain E. (159 aa) |
| | nuoF | NADH dehydrogenase I, chain F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family. (437 aa) |
| | nuoG | NADH dehydrogenase I, chain G; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. Belongs to the complex I 75 kDa subunit family. (779 aa) |
| | nuoI | NADH dehydrogenase I, chain I; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. (161 aa) |
| | nuoL | NADH dehydrogenase I, chain L. (673 aa) |
| | nuoM | NADH dehydrogenase I, chain M. (493 aa) |
| | nrdA | Ribonucleotide reductase, Coenzyme B12-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. (963 aa) |
| | pyrD | Dihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate with quinone as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 2 subfamily. (350 aa) |
| | int-11 | Phage-related integrase; Belongs to the 'phage' integrase family. (332 aa) |
| | ebA4923 | Hypothetical protein. (244 aa) |
| | int-12 | Phage-related integrase. (314 aa) |
| | int-13 | Phage-related integrase; Belongs to the 'phage' integrase family. (412 aa) |
| | int-14 | Phage-related integrase; Belongs to the 'phage' integrase family. (294 aa) |
| | int-15 | Phage-related integrase. (325 aa) |
| | clpX | ATP-dependent Clp protease ATP-binding,subunit clpX; ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP. (422 aa) |
| | ebA4980 | Hypothetical protein. (200 aa) |
| | ebA4984 | Conserved hypothetical protein. (703 aa) |
| | int-16 | Phage-related integrase; Belongs to the 'phage' integrase family. (417 aa) |
| | arsD | Arsenate resistance operon, repressor ArsD. (118 aa) |
| | xseA | Exodeoxyribonuclease vII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (458 aa) |
| | pfkA | Phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions. (418 aa) |
| | ebA5218 | Conserved hypothetical protein. (296 aa) |
| | ebA5251 | Predicted S-adenosylmethionine-dependent tRNA (guanine-N(7)-)-methyltransferase. (267 aa) |
| | ebA527 | DNA repair protein similar to radC family. (196 aa) |
| | fxd | Ferredoxin. (94 aa) |
| | padD | Phenylacetyl-CoA:acceptor oxidoreductase. (303 aa) |
| | holB | DNA-directed DNA polymerase III, delta subunit. (353 aa) |
| | uvrB | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] (685 aa) |
| | rpoE2 | Sigma factor, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily. (199 aa) |
| | ebA5520 | Hypothetical protein. (526 aa) |
| | ebA5528 | Hypothetical protein. (199 aa) |
| | uvrC | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. (602 aa) |
| | phaD | pH adaptation potassium efflux protein. (538 aa) |
| | ebA5658 | Putative peptide ABC transporter permease protein. (304 aa) |
| | ebA5686 | TPP-containing decarboxylase related to benzoylformate decarboxylase or acetolactate synthase. (569 aa) |
| | paaA2 | PaaA2 protein; Similar to aerobic phenylacetate degradation protein. (333 aa) |
| | paaB2 | PaaB2 protein; Similar to aerobic phenylacetate degradation protein. (93 aa) |
| | paaC2 | Similar to aerobic phenylacetate degradation protein. (251 aa) |
| | paaE2 | Similar to aerobic phenylacetate degradation protein. (358 aa) |
| | xccB | Biotin carboxyl carrier subunit of acetyl-CoA carboxylase-like protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (162 aa) |
| | xccC-2 | Biotin carboxylase subunit of unknown acetyl-CoA carboxylase-like enzyme. (451 aa) |
| | xccA-2 | Carboxylase subunit of unknown acetyl-CoA carboxylase-like enzyme. (494 aa) |
| | ebdA2 | Ethylbenzene dehydrogenase, alpha subunit. (978 aa) |
| | ebdB2 | Ethylbenzene dehydrogenase, beta subunit. (352 aa) |
| | ebA5821 | Conserved hypothetical protein. (181 aa) |
| | rpoE3 | ECF-family RNA polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. (231 aa) |
| | gcvP1 | Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. (972 aa) |
| | gcvT | Aminomethyltransferase of Glycine cleavage system; The glycine cleavage system catalyzes the degradation of glycine. (360 aa) |
| | eno | Enolase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family. (429 aa) |
| | ebA6193 | Conserved hypothetical protein. (309 aa) |
| | narI | Nitrate reductase, gamma subunit. (232 aa) |
| | narH | Nitrate reductase, beta subunit. (516 aa) |
| | narG | Nitrate reductase, alpha chain; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (1251 aa) |
| | ebA6293 | Hypothetical protein. (71 aa) |
| | int-19 | Phage-related integrase; Belongs to the 'phage' integrase family. (365 aa) |
| | ebA6366 | Hypothetical protein. (46 aa) |
| | hscB | Chaperone protein HscB involved in Fe-S cluster synthesis (DnaJ paralog); Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. (177 aa) |
| | iscU | IscU protein involved in Fe-S cluster formation; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. (126 aa) |
| | int-20 | Integrase or site-specific recombinase. (333 aa) |
| | ebA6418 | Hypothetical protein. (375 aa) |
| | mutS | DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. (879 aa) |
| | dnaQ | DNA-directed DNA polymerase, epsilon chain; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'- 5' exonuclease. (239 aa) |
| | ebA6491 | Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. (151 aa) |
| | ppk | Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP). Belongs to the polyphosphate kinase 1 (PPK1) family. (696 aa) |
| | mfd | Transcription-repair coupling protein Mfd; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1157 aa) |
| | ebA6583 | Predicted DNA helicase. (579 aa) |
| | ebA6657 | Hypothetical protein. (177 aa) |
| | oppC | Oligopeptide transport system permease protein. (476 aa) |
| | fabI | Enoyl-[acyl-carrier-protein] reductase. (263 aa) |
| | moaE | Molybdenum cofactor biosynthesis protein E. (161 aa) |
| | moaD | Molybdopterin (MPT) converting factor,subunit 1. (84 aa) |
| | sucB | 2-oxoglutarate dehydrogenase complex, dihydrolipoamide succinyltransferase; E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2- oxoglutarate to succinyl-CoA and CO(2). (394 aa) |
| | sucA | 2-oxoglutarate dehydrogenase complex, E1 component. (942 aa) |
| | istA-40 | Transposase. (277 aa) |
| | ebA6904 | Conserved hypothetical protein. (175 aa) |
| | ebA6920 | Putative maltooligosyltrehalose trehalohydrolase. (647 aa) |
| | glgC | Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family. (404 aa) |
| | rpoN2 | RNA polymerase sigma N (Sigma 54) factor transcription regulator protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. (480 aa) |
| | ndh | Putative NADH dehydrogenase. (473 aa) |
| | nadE | Glutamine-dependent NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source. (538 aa) |
| | folK | 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokin ase. (174 aa) |
| | ebA7118 | Deoxynucleoside kinase. (213 aa) |
| | rpoE4 | RNA polymerase sigma factor transcription regulator protein; Belongs to the sigma-70 factor family. ECF subfamily. (165 aa) |
| | ilvI | Thiamine pyrophosphate dependent acetolactate synthase. (569 aa) |
| | holC | DNA polymerase III, chi subunit. (145 aa) |
| | ebA7287 | Hypothetical protein. (833 aa) |
| | ebA753 | Conserved hypothetical protein. (706 aa) |
| | rpoS | RNA sigma factor RpoS; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the master transcriptional regulator of the stationary phase and the general stress response. (311 aa) |
| | ebA803 | Putative helicase. (510 aa) |
| | ebA806 | Hypothetical protein. (314 aa) |
| | dfp | Phosphopantothenoylcysteine synthetase/decarboxylase; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family. (402 aa) |
| | radC | DNA repair protein, radC; Belongs to the UPF0758 family. (225 aa) |
| | pheT | phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (792 aa) |
| | pheS | phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (343 aa) |
| | tldD | Zn-dependent peptidase, potential modulator of DNA gyrase. (481 aa) |
| | ebB121 | Hypothetical protein. (89 aa) |
| | ebB147 | Conserved hypothetical protein. (88 aa) |
| | ebB153 | Predicted carboxymuconolactone decarboxylase; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family. (144 aa) |
| | sdhC | Putative succinate dehydrogenase cytochrome B subunit (Succinate dehydrogenase, cytochrome b556 subunit. (128 aa) |
| | ilvN | Acetolactate synthase isozyme I small subunit. (104 aa) |
| | padF | Phenylglyoxylate:acceptor oxidoreductase. (99 aa) |
| | gcvH | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. (128 aa) |
| | iscA | IscA protein involved in Fe-S cluster synthesis; Belongs to the HesB/IscA family. (107 aa) |
| | ebB34 | Conserved hypothetical protein. (133 aa) |
| | ebB63 | Hypothetical protein. (90 aa) |
| | xccB-2 | Biotin carboxyl carrier protein of unknown carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. (163 aa) |
| | rnpA | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (119 aa) |
| | sdhC-2 | Succinate dehydrogenase cytochrome b-556 subunit (EC 1.3.99.1). (129 aa) |
| | ebD53 | Possible NifU homolog. (137 aa) |
