(91 nodes) Mixed, incl. Membrane organization, and Porin activity network (Prevotella enoeca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALO47729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	ALO49755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47731.1	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology. (872 aa)
	ALO47733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALO47734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	ALO47949.1	Esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (330 aa)
	ALO47972.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	ALO49795.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (349 aa)
	ALO48034.1	Cell surface protein SprA; Derived by automated computational analysis using gene prediction method: Protein Homology. (2500 aa)
	ALO48050.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (386 aa)
	ALO49806.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (735 aa)
	ALO48094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	ALO48109.1	Peptidase S41; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
	ALO49813.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (266 aa)
	ALO48227.1	ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (236 aa)
	ALO48229.1	Alanine dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (467 aa)
	ALO48230.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
	ALO48231.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (430 aa)
	ALO48232.1	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	ALO48233.1	Hemolysin; Derived by automated computational analysis using gene prediction method: Protein Homology. (424 aa)
	ALO48234.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (713 aa)
	ALO48321.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (368 aa)
	ALO48327.1	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (943 aa)
	ALO48347.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (423 aa)
	ALO48348.1	Gliding motility protein GldB; Derived by automated computational analysis using gene prediction method: Protein Homology. (267 aa)
	ALO48357.1	Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	ALO49848.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (399 aa)
	ALO48358.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (401 aa)
	ALO48359.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (308 aa)
	ALO48360.1	tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA; Derived by automated computational analysis using gene prediction method: Protein Homology. (222 aa)
	ALO48403.1	Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (513 aa)
	ALO49853.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (186 aa)
	ALO48516.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	ALO48541.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	ALO48622.1	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (552 aa)
	ALO49880.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ALO48625.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	ALO48626.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)
	ALO48709.1	Porin; Derived by automated computational analysis using gene prediction method: Protein Homology. (375 aa)
	ALO48752.1	Collagen-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (985 aa)
	ALO48765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	ALO48874.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (506 aa)
	ALO48875.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (245 aa)
	ALO48876.1	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology. (448 aa)
	ALO48960.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (171 aa)
	ALO48961.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (254 aa)
	ALO48966.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (154 aa)
	rlmN	23S rRNA (adenine(2503)-C2)-methyltransferase; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family. (341 aa)
	ALO48977.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	ALO48978.1	4-hydroxythreonine-4-phosphate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PdxA family. (364 aa)
	ALO48979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (329 aa)
	ALO49928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	ALO49018.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALO49146.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (726 aa)
	ALO49938.1	NLPA lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
	ALO49196.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (218 aa)
	ALO49205.1	PorT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ALO49221.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (987 aa)
	ALO49222.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	ALO49267.1	Phosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
	ALO49277.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	ALO49313.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (833 aa)
	ALO49314.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1542 aa)
	ALO49315.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (767 aa)
	ALO49377.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	ALO49379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ALO49380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ALO49381.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ALO49382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	ALO49978.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
	ALO49979.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (651 aa)
	priA	Primosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (756 aa)
	ALO49491.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
	ALO49492.1	Gliding motility protein GldN; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	ALO49981.1	Gliding motility protein GldM; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	ALO49493.1	Gliding motility protein GldL; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALO49494.1	Gliding motility-associated lipoprotein GldK; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	ALO49982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ALO49503.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	ALO49507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	ALO49534.1	Peroxiredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (394 aa)
	ALO49543.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	ALO49578.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
	ALO49995.1	Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (318 aa)
	ALO49607.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	ALO49608.1	Por secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1186 aa)
	ALO49620.1	AhpC/TSA family antioxidant; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
	ALO49621.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (560 aa)
	ALO49622.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	ALO49623.1	Polyketide cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)

Your Current Organism:

Prevotella enoeca

NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO47729.1	ALO47730.1	AS203_00260	AS203_00265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ALO47729.1	ALO47731.1	AS203_00260	AS203_00275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ALO47729.1	ALO47733.1	AS203_00260	AS203_00285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALO47729.1	ALO47734.1	AS203_00260	AS203_00290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
ALO47729.1	ALO48232.1	AS203_00260	AS203_03295	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.593
ALO47729.1	ALO48234.1	AS203_00260	AS203_03305	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.434
ALO47729.1	ALO48348.1	AS203_00260	AS203_04000	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Gliding motility protein GldB; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.431
ALO47729.1	ALO48403.1	AS203_00260	AS203_04330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hemin receptor; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
ALO47729.1	ALO48541.1	AS203_00260	AS203_05155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.653
ALO47729.1	ALO48765.1	AS203_00260	AS203_06475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ALO47729.1	ALO48875.1	AS203_00260	AS203_07095	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.668
ALO47729.1	ALO48876.1	AS203_00260	AS203_07100	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidoglycan-binding protein LysM; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.441
ALO47729.1	ALO49221.1	AS203_00260	AS203_09085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALO47729.1	ALO49315.1	AS203_00260	AS203_09625	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.429
ALO47729.1	ALO49491.1	AS203_00260	AS203_10630	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.468
ALO47729.1	ALO49503.1	AS203_00260	AS203_10745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ALO47729.1	ALO49620.1	AS203_00260	AS203_11430	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AhpC/TSA family antioxidant; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.440
ALO47729.1	ALO49755.1	AS203_00260	AS203_00270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ALO47729.1	ALO49806.1	AS203_00260	AS203_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
ALO47729.1	ALO49813.1	AS203_00260	AS203_02570	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.552