(36 nodes) Mixed, incl. Membrane organization, and PPIC-type PPIASE domain network (Prevotella enoeca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALO47729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	ALO49755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47731.1	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology. (872 aa)
	ALO47733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALO47734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	ALO47972.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (387 aa)
	ALO48034.1	Cell surface protein SprA; Derived by automated computational analysis using gene prediction method: Protein Homology. (2500 aa)
	ALO49806.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (735 aa)
	ALO48094.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (136 aa)
	ALO48327.1	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (943 aa)
	ALO48516.1	TonB-dependent receptor; Derived by automated computational analysis using gene prediction method: Protein Homology. (792 aa)
	ALO48622.1	DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (552 aa)
	ALO49880.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (301 aa)
	ALO48625.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (133 aa)
	ALO48765.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	ALO49928.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (413 aa)
	ALO49018.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALO49205.1	PorT family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)
	ALO49221.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (987 aa)
	ALO49222.1	Two-component system response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (524 aa)
	ALO49277.1	Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (314 aa)
	ALO49377.1	Cell envelope biogenesis protein OmpA; Derived by automated computational analysis using gene prediction method: Protein Homology. (380 aa)
	ALO49379.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (99 aa)
	ALO49380.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (569 aa)
	ALO49381.1	Peptidylprolyl isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (478 aa)
	ALO49382.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (441 aa)
	ALO49492.1	Gliding motility protein GldN; Derived by automated computational analysis using gene prediction method: Protein Homology. (347 aa)
	ALO49981.1	Gliding motility protein GldM; Derived by automated computational analysis using gene prediction method: Protein Homology. (516 aa)
	ALO49493.1	Gliding motility protein GldL; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALO49494.1	Gliding motility-associated lipoprotein GldK; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
	ALO49982.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
	ALO49503.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	ALO49507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)
	ALO49607.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (390 aa)
	ALO49608.1	Por secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1186 aa)

Your Current Organism:

Prevotella enoeca

NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A

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... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO47729.1	ALO47730.1	AS203_00260	AS203_00265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ALO47729.1	ALO47731.1	AS203_00260	AS203_00275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ALO47729.1	ALO47733.1	AS203_00260	AS203_00285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALO47729.1	ALO47734.1	AS203_00260	AS203_00290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
ALO47729.1	ALO48765.1	AS203_00260	AS203_06475	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.439
ALO47729.1	ALO49221.1	AS203_00260	AS203_09085	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.455
ALO47729.1	ALO49503.1	AS203_00260	AS203_10745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ALO47729.1	ALO49755.1	AS203_00260	AS203_00270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ALO47729.1	ALO49806.1	AS203_00260	AS203_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
ALO47729.1	ALO49982.1	AS203_00260	AS203_10655	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.452
ALO47730.1	ALO47729.1	AS203_00265	AS203_00260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ALO47730.1	ALO47731.1	AS203_00265	AS203_00275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47730.1	ALO47733.1	AS203_00265	AS203_00285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ALO47730.1	ALO47734.1	AS203_00265	AS203_00290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
ALO47730.1	ALO49755.1	AS203_00265	AS203_00270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ALO47730.1	ALO49806.1	AS203_00265	AS203_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ALO47731.1	ALO47729.1	AS203_00275	AS203_00260	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ALO47731.1	ALO47730.1	AS203_00275	AS203_00265	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47731.1	ALO47733.1	AS203_00275	AS203_00285	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47731.1	ALO47734.1	AS203_00275	AS203_00290	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921