(11 nodes) Membrane organization, and Tetratricopeptide repeat network (Prevotella enoeca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALO47729.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47730.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (166 aa)
	ALO49755.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (170 aa)
	ALO47731.1	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology. (872 aa)
	ALO47733.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (226 aa)
	ALO47734.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (476 aa)
	ALO49806.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (735 aa)
	ALO48327.1	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (943 aa)
	ALO49018.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	ALO49503.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (694 aa)
	ALO49507.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (274 aa)

Your Current Organism:

Prevotella enoeca

NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO47729.1	ALO47730.1	AS203_00260	AS203_00265	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ALO47729.1	ALO47731.1	AS203_00260	AS203_00275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ALO47729.1	ALO47733.1	AS203_00260	AS203_00285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.768
ALO47729.1	ALO47734.1	AS203_00260	AS203_00290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.850
ALO47729.1	ALO49503.1	AS203_00260	AS203_10745	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
ALO47729.1	ALO49755.1	AS203_00260	AS203_00270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.709
ALO47729.1	ALO49806.1	AS203_00260	AS203_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.588
ALO47730.1	ALO47729.1	AS203_00265	AS203_00260	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.743
ALO47730.1	ALO47731.1	AS203_00265	AS203_00275	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47730.1	ALO47733.1	AS203_00265	AS203_00285	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.739
ALO47730.1	ALO47734.1	AS203_00265	AS203_00290	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.687
ALO47730.1	ALO49755.1	AS203_00265	AS203_00270	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.774
ALO47730.1	ALO49806.1	AS203_00265	AS203_02390	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.505
ALO47731.1	ALO47729.1	AS203_00275	AS203_00260	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.760
ALO47731.1	ALO47730.1	AS203_00275	AS203_00265	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47731.1	ALO47733.1	AS203_00275	AS203_00285	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.845
ALO47731.1	ALO47734.1	AS203_00275	AS203_00290	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.921
ALO47731.1	ALO48327.1	AS203_00275	AS203_03880	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.745
ALO47731.1	ALO49018.1	AS203_00275	AS203_07940	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.480
ALO47731.1	ALO49503.1	AS203_00275	AS203_10745	Outer membrane protein assembly factor BamA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.610