(8 nodes) Organic acid binding network (Prevotella enoeca)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ALO47760.1	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (720 aa)
	ALO47787.1	Formiminotransferase-cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (567 aa)
	ALO47961.1	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (616 aa)
	ALO49868.1	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (829 aa)
	pyrB	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. (315 aa)
	ALO48822.1	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (770 aa)
	ALO48977.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
	argR	Arginine repressor; Regulates arginine biosynthesis genes. (160 aa)

Your Current Organism:

Prevotella enoeca

NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALO47760.1	ALO47961.1	AS203_00435	AS203_01655	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ALO47760.1	ALO48822.1	AS203_00435	AS203_06795	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ALO47760.1	ALO49868.1	AS203_00435	AS203_05195	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ALO47787.1	pyrB	AS203_00570	AS203_06790	Formiminotransferase-cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.800
ALO47961.1	ALO47760.1	AS203_01655	AS203_00435	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
ALO47961.1	ALO48822.1	AS203_01655	AS203_06795	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ALO47961.1	ALO49868.1	AS203_01655	AS203_05195	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ALO48822.1	ALO47760.1	AS203_06795	AS203_00435	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.527
ALO48822.1	ALO47961.1	AS203_06795	AS203_01655	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.650
ALO48822.1	ALO49868.1	AS203_06795	AS203_05195	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
ALO48822.1	pyrB	AS203_06795	AS203_06790	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	0.703
ALO49868.1	ALO47760.1	AS203_05195	AS203_00435	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.563
ALO49868.1	ALO47961.1	AS203_05195	AS203_01655	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.575
ALO49868.1	ALO48822.1	AS203_05195	AS203_06795	Transglycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.936
pyrB	ALO47787.1	AS203_06790	AS203_00570	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	Formiminotransferase-cyclodeaminase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.800
pyrB	ALO48822.1	AS203_06790	AS203_06795	Aspartate carbamoyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.	Penicillin-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.703