(23 nodes) Proline metabolic process, and Peptidase M20 network (Papilio machaon)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RR48_03743	Aminoacylase-1. (652 aa)
	RR48_00856	Aminoacylase-1. (213 aa)
	RR48_05547	Ornithine aminotransferase. (391 aa)
	RR48_00467	Pyrroline-5-carboxylate reductase 1, mitochondrial. (228 aa)
	RR48_05160	Proline dehydrogenase 1, mitochondrial. (146 aa)
	RR48_04921	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family. (567 aa)
	RR48_03275	Aminoacylase-1. (302 aa)
	RR48_05161	Proline dehydrogenase; Converts proline to delta-1-pyrroline-5-carboxylate. (510 aa)
	RR48_04655	Arginase-2, mitochondrial; Belongs to the arginase family. (652 aa)
	RR48_00620	Aminoacylase-1. (144 aa)
	RR48_03273	Aminoacylase-1A. (155 aa)
	RR48_05938	Pyrroline-5-carboxylate reductase. (271 aa)
	RR48_11739	Argininosuccinate synthase. (413 aa)
	RR48_11281	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family. (301 aa)
	RR48_15331	Cytosol aminopeptidase. (537 aa)
	RR48_09000	Uncharacterized protein. (404 aa)
	RR48_14802	Aminoacylase-1. (393 aa)
	RR48_14836	Prolyl 4-hydroxylase subunit alpha-2. (541 aa)
	RR48_14803	Aminoacylase-1A. (119 aa)
	RR48_14804	Aminoacylase-1. (948 aa)
	RR48_06379	Alpha-aminoadipic semialdehyde synthase, mitochondrial. (951 aa)
	RR48_09075	Argininosuccinate lyase. (483 aa)
	RR48_11062	Pyrroline-5-carboxylate reductase; Belongs to the pyrroline-5-carboxylate reductase family. (276 aa)

Your Current Organism:

Papilio machaon

NCBI taxonomy Id: 76193
Other names: Old World swallowtail, P. machaon, artemisia swallowtail, common yellow swallowtail

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RR48_00467	RR48_04655	A0A0N0PF62	A0A0N1PI57	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Arginase-2, mitochondrial; Belongs to the arginase family.	0.481
RR48_00467	RR48_04921	A0A0N0PF62	A0A0N1IH81	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.	0.440
RR48_00467	RR48_05547	A0A0N0PF62	A0A0N0PDH9	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Ornithine aminotransferase.	0.653
RR48_00467	RR48_09000	A0A0N0PF62	A0A194QZD7	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Uncharacterized protein.	0.579
RR48_00467	RR48_09075	A0A0N0PF62	A0A194RB40	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Argininosuccinate lyase.	0.470
RR48_00467	RR48_11739	A0A0N0PF62	A0A194QMD4	Pyrroline-5-carboxylate reductase 1, mitochondrial.	Argininosuccinate synthase.	0.479
RR48_00620	RR48_00856	A0A0N1PIX5	A0A0N0PDH2	Aminoacylase-1.	Aminoacylase-1.	0.523
RR48_00620	RR48_05547	A0A0N1PIX5	A0A0N0PDH9	Aminoacylase-1.	Ornithine aminotransferase.	0.505
RR48_00620	RR48_09000	A0A0N1PIX5	A0A194QZD7	Aminoacylase-1.	Uncharacterized protein.	0.505
RR48_00620	RR48_09075	A0A0N1PIX5	A0A194RB40	Aminoacylase-1.	Argininosuccinate lyase.	0.418
RR48_00620	RR48_11281	A0A0N1PIX5	A0A194QRW5	Aminoacylase-1.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.502
RR48_00620	RR48_11739	A0A0N1PIX5	A0A194QMD4	Aminoacylase-1.	Argininosuccinate synthase.	0.702
RR48_00620	RR48_14804	A0A0N1PIX5	A0A194R1P5	Aminoacylase-1.	Aminoacylase-1.	0.447
RR48_00856	RR48_00620	A0A0N0PDH2	A0A0N1PIX5	Aminoacylase-1.	Aminoacylase-1.	0.523
RR48_00856	RR48_03273	A0A0N0PDH2	A0A0N1PJ29	Aminoacylase-1.	Aminoacylase-1A.	0.535
RR48_00856	RR48_05547	A0A0N0PDH2	A0A0N0PDH9	Aminoacylase-1.	Ornithine aminotransferase.	0.505
RR48_00856	RR48_09000	A0A0N0PDH2	A0A194QZD7	Aminoacylase-1.	Uncharacterized protein.	0.505
RR48_00856	RR48_09075	A0A0N0PDH2	A0A194RB40	Aminoacylase-1.	Argininosuccinate lyase.	0.418
RR48_00856	RR48_11281	A0A0N0PDH2	A0A194QRW5	Aminoacylase-1.	Ornithine decarboxylase; Belongs to the Orn/Lys/Arg decarboxylase class-II family.	0.502
RR48_00856	RR48_11739	A0A0N0PDH2	A0A194QMD4	Aminoacylase-1.	Argininosuccinate synthase.	0.702