(6 nodes) Mixed, incl. rRNA transcription, and Pumilio-like repeats network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162U0Y3	Uncharacterized protein; Belongs to the DEAD box helicase family. (425 aa)
	A0A163B148	Uncharacterized protein. (583 aa)
	A0A163CS05	Uncharacterized protein. (1114 aa)
	A0A163CS98	Uncharacterized protein. (778 aa)
	A0A167MB73	Uncharacterized protein. (1869 aa)
	A0A167QR71	ATP-dependent RNA helicase DBP10. (820 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162U0Y3	A0A163B148	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.726
A0A162U0Y3	A0A163CS05	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.803
A0A162U0Y3	A0A163CS98	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.894
A0A162U0Y3	A0A167MB73	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.880
A0A162U0Y3	A0A167QR71	Uncharacterized protein; Belongs to the DEAD box helicase family.	ATP-dependent RNA helicase DBP10.	0.734
A0A163B148	A0A162U0Y3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.726
A0A163B148	A0A163CS98	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A163B148	A0A167MB73	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A163B148	A0A167QR71	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.841
A0A163CS05	A0A162U0Y3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.803
A0A163CS05	A0A163CS98	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A163CS05	A0A167MB73	Uncharacterized protein.	Uncharacterized protein.	0.755
A0A163CS05	A0A167QR71	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.928
A0A163CS98	A0A162U0Y3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.894
A0A163CS98	A0A163B148	Uncharacterized protein.	Uncharacterized protein.	0.930
A0A163CS98	A0A163CS05	Uncharacterized protein.	Uncharacterized protein.	0.841
A0A163CS98	A0A167MB73	Uncharacterized protein.	Uncharacterized protein.	0.721
A0A163CS98	A0A167QR71	Uncharacterized protein.	ATP-dependent RNA helicase DBP10.	0.907
A0A167MB73	A0A162U0Y3	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.880
A0A167MB73	A0A163B148	Uncharacterized protein.	Uncharacterized protein.	0.440