(6 nodes) U2 snRNP network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162N8W7	PSP domain-containing protein. (443 aa)
	A0A162QAC5	Splicing factor subunit; Belongs to the SF3B5 family. (84 aa)
	A0A162TBE7	CPSF_A domain-containing protein. (1202 aa)
	A0A162WGT1	Uncharacterized protein. (254 aa)
	A0A163B835	RRM domain-containing protein. (122 aa)
	A0A167KR42	SF3b1 domain-containing protein. (1209 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162N8W7	A0A162QAC5	PSP domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A162N8W7	A0A162TBE7	PSP domain-containing protein.	CPSF_A domain-containing protein.	0.999
A0A162N8W7	A0A162WGT1	PSP domain-containing protein.	Uncharacterized protein.	0.999
A0A162N8W7	A0A163B835	PSP domain-containing protein.	RRM domain-containing protein.	0.999
A0A162N8W7	A0A167KR42	PSP domain-containing protein.	SF3b1 domain-containing protein.	0.999
A0A162QAC5	A0A162N8W7	Splicing factor subunit; Belongs to the SF3B5 family.	PSP domain-containing protein.	0.998
A0A162QAC5	A0A162TBE7	Splicing factor subunit; Belongs to the SF3B5 family.	CPSF_A domain-containing protein.	0.998
A0A162QAC5	A0A162WGT1	Splicing factor subunit; Belongs to the SF3B5 family.	Uncharacterized protein.	0.998
A0A162QAC5	A0A163B835	Splicing factor subunit; Belongs to the SF3B5 family.	RRM domain-containing protein.	0.999
A0A162QAC5	A0A167KR42	Splicing factor subunit; Belongs to the SF3B5 family.	SF3b1 domain-containing protein.	0.998
A0A162TBE7	A0A162N8W7	CPSF_A domain-containing protein.	PSP domain-containing protein.	0.999
A0A162TBE7	A0A162QAC5	CPSF_A domain-containing protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A162TBE7	A0A162WGT1	CPSF_A domain-containing protein.	Uncharacterized protein.	0.999
A0A162TBE7	A0A163B835	CPSF_A domain-containing protein.	RRM domain-containing protein.	0.999
A0A162TBE7	A0A167KR42	CPSF_A domain-containing protein.	SF3b1 domain-containing protein.	0.999
A0A162WGT1	A0A162N8W7	Uncharacterized protein.	PSP domain-containing protein.	0.999
A0A162WGT1	A0A162QAC5	Uncharacterized protein.	Splicing factor subunit; Belongs to the SF3B5 family.	0.998
A0A162WGT1	A0A162TBE7	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999
A0A162WGT1	A0A163B835	Uncharacterized protein.	RRM domain-containing protein.	0.999
A0A162WGT1	A0A167KR42	Uncharacterized protein.	SF3b1 domain-containing protein.	0.999