(11 nodes) U5 snRNP, and Small nuclear ribonucleoprotein F network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162NIJ6	Sm domain-containing protein. (172 aa)
	A0A162PKM0	Uncharacterized protein; Belongs to the DEAD box helicase family. (553 aa)
	A0A162PQ22	Uncharacterized protein. (910 aa)
	A0A162PSU0	Sm domain-containing protein. (84 aa)
	A0A162UIL5	WD_REPEATS_REGION domain-containing protein. (360 aa)
	A0A162URN8	F-box domain-containing protein. (460 aa)
	A0A162VAV6	MPN domain-containing protein. (2557 aa)
	A0A162ZQZ9	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family. (152 aa)
	A0A162ZZU7	Tr-type G domain-containing protein. (981 aa)
	A0A163CS66	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family. (89 aa)
	A0A163DTP0	Small nuclear ribonucleoprotein Sm D3. (117 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

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Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A162NIJ6	A0A162PKM0	Sm domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.959
A0A162NIJ6	A0A162PQ22	Sm domain-containing protein.	Uncharacterized protein.	0.959
A0A162NIJ6	A0A162PSU0	Sm domain-containing protein.	Sm domain-containing protein.	0.980
A0A162NIJ6	A0A162UIL5	Sm domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.972
A0A162NIJ6	A0A162URN8	Sm domain-containing protein.	F-box domain-containing protein.	0.962
A0A162NIJ6	A0A162VAV6	Sm domain-containing protein.	MPN domain-containing protein.	0.959
A0A162NIJ6	A0A162ZQZ9	Sm domain-containing protein.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.960
A0A162NIJ6	A0A162ZZU7	Sm domain-containing protein.	Tr-type G domain-containing protein.	0.978
A0A162NIJ6	A0A163CS66	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.985
A0A162NIJ6	A0A163DTP0	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D3.	0.985
A0A162PKM0	A0A162NIJ6	Uncharacterized protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein.	0.959
A0A162PKM0	A0A162PQ22	Uncharacterized protein; Belongs to the DEAD box helicase family.	Uncharacterized protein.	0.999
A0A162PKM0	A0A162PSU0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Sm domain-containing protein.	0.962
A0A162PKM0	A0A162UIL5	Uncharacterized protein; Belongs to the DEAD box helicase family.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A162PKM0	A0A162URN8	Uncharacterized protein; Belongs to the DEAD box helicase family.	F-box domain-containing protein.	0.958
A0A162PKM0	A0A162VAV6	Uncharacterized protein; Belongs to the DEAD box helicase family.	MPN domain-containing protein.	0.980
A0A162PKM0	A0A162ZQZ9	Uncharacterized protein; Belongs to the DEAD box helicase family.	Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.	0.998
A0A162PKM0	A0A162ZZU7	Uncharacterized protein; Belongs to the DEAD box helicase family.	Tr-type G domain-containing protein.	0.999
A0A162PKM0	A0A163CS66	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.971
A0A162PKM0	A0A163DTP0	Uncharacterized protein; Belongs to the DEAD box helicase family.	Small nuclear ribonucleoprotein Sm D3.	0.967