(12 nodes) RNA-directed RNA polymerase complex, and PAZ domain network (Phycomyces blakesleeanus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A162PV65	Uncharacterized protein; Belongs to the argonaute family. (842 aa)
	A0A162UCQ1	SAP domain-containing protein. (276 aa)
	A0A162UJJ9	Uncharacterized protein; Belongs to the argonaute family. (840 aa)
	Dcl	DsRNA-specific ribonuclease III dicer; Belongs to the helicase family. Dicer subfamily. (1568 aa)
	RdRP-1b	RNA-dependent RNA polymerase. (1112 aa)
	RdRP-3	RNA-dependent RNA polymerase. (1200 aa)
	A0A167J552	Uncharacterized protein. (77 aa)
	A0A167J9D7	Uncharacterized protein. (447 aa)
	A0A167KM15	MARVEL domain-containing protein. (307 aa)
	RdRP-1a	RNA-dependent RNA polymerase. (1238 aa)
	RdRP-2	RNA-dependent RNA polymerase. (1278 aa)
	A0A167RGN6	Uncharacterized protein. (1290 aa)

Your Current Organism:

Phycomyces blakesleeanus

NCBI taxonomy Id: 763407
Other names: P. blakesleeanus NRRL 1555(-), Phycomyces blakesleeanus NRRL 1555(-)

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A162PV65	A0A162UCQ1	A0A162PV65	A0A162UCQ1	Uncharacterized protein; Belongs to the argonaute family.	SAP domain-containing protein.	0.463
A0A162PV65	A0A167J552	A0A162PV65	A0A167J552	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.560
A0A162PV65	A0A167J9D7	A0A162PV65	A0A167J9D7	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.482
A0A162PV65	A0A167KM15	A0A162PV65	A0A167KM15	Uncharacterized protein; Belongs to the argonaute family.	MARVEL domain-containing protein.	0.800
A0A162PV65	A0A167RGN6	A0A162PV65	A0A167RGN6	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.596
A0A162PV65	Dcl	A0A162PV65	A0A162X0L5	Uncharacterized protein; Belongs to the argonaute family.	DsRNA-specific ribonuclease III dicer; Belongs to the helicase family. Dicer subfamily.	0.977
A0A162UCQ1	A0A162PV65	A0A162UCQ1	A0A162PV65	SAP domain-containing protein.	Uncharacterized protein; Belongs to the argonaute family.	0.463
A0A162UCQ1	A0A162UJJ9	A0A162UCQ1	A0A162UJJ9	SAP domain-containing protein.	Uncharacterized protein; Belongs to the argonaute family.	0.463
A0A162UCQ1	Dcl	A0A162UCQ1	A0A162X0L5	SAP domain-containing protein.	DsRNA-specific ribonuclease III dicer; Belongs to the helicase family. Dicer subfamily.	0.682
A0A162UCQ1	RdRP-1a	A0A162UCQ1	A0A167NFN8	SAP domain-containing protein.	RNA-dependent RNA polymerase.	0.500
A0A162UCQ1	RdRP-1b	A0A162UCQ1	A0A163ABK2	SAP domain-containing protein.	RNA-dependent RNA polymerase.	0.500
A0A162UCQ1	RdRP-2	A0A162UCQ1	A0A167Q545	SAP domain-containing protein.	RNA-dependent RNA polymerase.	0.584
A0A162UCQ1	RdRP-3	A0A162UCQ1	A0A163CZ85	SAP domain-containing protein.	RNA-dependent RNA polymerase.	0.584
A0A162UJJ9	A0A162UCQ1	A0A162UJJ9	A0A162UCQ1	Uncharacterized protein; Belongs to the argonaute family.	SAP domain-containing protein.	0.463
A0A162UJJ9	A0A167J552	A0A162UJJ9	A0A167J552	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.560
A0A162UJJ9	A0A167J9D7	A0A162UJJ9	A0A167J9D7	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.482
A0A162UJJ9	A0A167KM15	A0A162UJJ9	A0A167KM15	Uncharacterized protein; Belongs to the argonaute family.	MARVEL domain-containing protein.	0.800
A0A162UJJ9	A0A167RGN6	A0A162UJJ9	A0A167RGN6	Uncharacterized protein; Belongs to the argonaute family.	Uncharacterized protein.	0.596
A0A162UJJ9	Dcl	A0A162UJJ9	A0A162X0L5	Uncharacterized protein; Belongs to the argonaute family.	DsRNA-specific ribonuclease III dicer; Belongs to the helicase family. Dicer subfamily.	0.977
A0A167J552	A0A162PV65	A0A167J552	A0A162PV65	Uncharacterized protein.	Uncharacterized protein; Belongs to the argonaute family.	0.560